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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatattactttcttttttgaaacatatgtagcactatccatgttggtcgattgcatatgccatgacaaaatattgcatttttctgtgtcatcatctgatatttgtttcgttgattgatgtagGTTGAAATTCATTCAGGACGCCCACACCAAATTAGGATACACCTTGCATACATTGGGCATCCTCTTGTAG

Basic information

species Oryza sativa
transcript LOC_Os03g17920.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17920.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G065552_T01 (Zea mays), 3'ss of exon 3
----------------------------------------gtaatatattactttc---ttttttgaaacatatgtagcactatccatgttggt----cgattgcatatgccatgacaaaatattgcatttttctgtg----tcatcatctgatatttgtttcgttgattgatgtagGTTGAAATTCATTCAGGACGCCCACACCAAATTAGGATACACCTTGCATACATTGGGCATCCTCTTGTAG--------------
                                         | |  |  | || |    | ||   |||  |   |||||  |||    || |     |||||   |||||    |     | ||    |    || |    | |  || |||| |||  ||   | |||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| || |||||||              
gtagagtgtgttgtttcttgactgtaaacaagatatatgttttagctcctgctcttacatgttcacaaatgtgaatagcatcatctgcttttgaattgcgattatgtatgctggcaagttttcttttgctgccttgggcattttaatatttgatgtttccttttctcattgatgtagGTTGAAATTCATTCAGGACGACCTCACCAAATAAGGATACACCTTGCATACATTGGGCACCCACTTGTAGGTAAGTCCCTCGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatattgcatttttctgtgtcatcatctgatatttgtttcgttgattgatgtagGTTGAAATTCATTCAGGACGCCCACACCAAATTAGGATACACCTTGCATACATTGGGCATCCTCTTGTAG
                                            gattgat  putative branch site (score: 4)
                              atatttgttt  TA-rich tract