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gtagctctatccactgattgtactgtcatagttatcttgcttaattttttgggcaacacattgtttccttcataaatgaagaccatgatgctatgatgctctattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGCACCACATTTACTTGATGTGCTTTATGAGGATGATGACATG
species | Oryza sativa |
transcript | LOC_Os03g17920.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCT-AG GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGCEST: gi|88425251|gb|CI564768.1|CI564768
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
EST: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGCEST: gi|88388351|gb|CI627890.1|CI627890
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
EST: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCC-TTCGCEST: gi|88392883|gb|CI614765.1|CI614765
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
EST: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCCGGAGCC-TTCGCEST: gi|88317451|gb|CI628100.1|CI628100
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
EST: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
cacattgtttccttcataaatgaagaccatgatgctatgatgctctattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGCACCACATTTACTTGATGTGCTTTATGAGGATGATGACATG
ctctatttt CT-rich tract
ttcataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctctatccactgattgtactgtcatagttatcttgcttaattttttgggcaacacattgtttccttcataaatgaagaccatgatgctatgatgctctattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGCACCACATTTACTTGATGTGCTTTATGAGGATGATGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG