1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcatgcttgtttctcttagcactgaaggtttatctaaaactatgttttgcattatgttagtttattgatttggcatctactgtatctctttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGCAAAACCACATTGACCTTGTATTGACCGAGGTCGTAATGCCACGTCTGTC
species | Oryza sativa |
transcript | LOC_Os03g17570.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAG TTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGEST: gi|29642421|gb|CB647428.1|CB647428
genomic: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactg ... ttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTG
EST: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAG TTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGCEST: gi|29642419|gb|CB647426.1|CB647426
genomic: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactg ... ttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGC
EST: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAG TTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGC
genomic: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactg ... ttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGC
ttttgcattatgttagtttattgatttggcatctactgtatctctttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGCAAAACCACATTGACCTTGTATTGACCGAGGTCGTAATGCCACGTCTGTC
tattgat putative branch site (score: 14)
tatctctttcattct putative PPT
attatgttagtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatgcttgtttctcttagcactgaaggtttatctaaaactatgttttgcattatgttagtttattgatttggcatctactgtatctctttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGCAAAACCACATTGACCTTGTATTGACCGAGGTCGTAATGCCACGTCTGTC
tgcatgc
- - - - tgtttct
- - - - - - - - - -gcactga
- - - - - - - - - - - - - - - - - ctaaaac
- - - - - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctac