1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
species | Oryza sativa |
transcript | LOC_Os03g16980.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGEST: gi|428184|gb|D24332.1|D24332
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGEST: gi|33680606|gb|CF308845.1|CF308845
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGEST: gi|58590735|gb|CF989043.1|CF989043
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG ACCATCAAGACAAACGTTATCGGAACCCTGAA-ATGCTTGGACTTGCCAAGEST: gi|33380802|gb|CF196145.1|CF196145
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGEST: gi|313080404|gb|HO213412.1|HO213412
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGEST: gi|58656016|gb|CK044696.1|CK044696
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
caaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
ttctgat putative branch site (score: 3)
atatttaaatggatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT