1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagatgctcttcaatgcttcaccaaactgttctttatggtgcacatgtatggtagcttgaattttagtaactccttttgcttattgtgcttatatctcagGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACC
species | Oryza sativa |
transcript | LOC_Os03g15590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTG GTGGTTGGTGCTAGTGGGGTGATCAACTTGATTATAGTGATGATGTTTGTGEST: gi|33655703|gb|CF278317.1|CF278317
genomic: GGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGgtaaatacat ... tatatctcagGTG-TTGGTGCTAGTGGG-TGATCAACTTGATTATAGTGATGATGTTTGTG
EST: GGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTG GTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGC
genomic: GGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGgtaaatacat ... tatatctcagGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGC
tgtatggtagcttgaattttagtaactccttttgcttattgtgcttatatctcagGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACC
tagtaac putative branch site (score: 77)
ttgaattttagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatgctcttcaatgcttcaccaaactgttctttatggtgcacatgtatggtagcttgaattttagtaactccttttgcttattgtgcttatatctcagGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACC
-agatgct
- - - - - - - tgcttca
- - - - - - - - - - - - - -tgttctt
- - - - - - - - - - - - - - - - - - tggtgca
- - - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgaa