Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttccctaccatatttctgtgcatattacagtattaaattcatgtatgtttacatattctgttggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGATGGAACCAAAAACGAGTGGGGCTGGTGCAAGCAAAAG

Basic information

species Oryza sativa
transcript LOC_Os03g14450.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g14450.2 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S1_526V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------gtatgtgttccctaccatatttctg---tgcatattacagtattaaattcatgtatgtttacatattctgttggctt---tgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGATGGAACCAAAAACGAGTGGGGCTGGTGCAAGCAAAAG
                    | | |  ||||  |   ||   |||    | | | |  |||||     |  ||    |||| || | |||||  |||   |||||||||| ||| | || ||||  || |||||||||||||||||  |||| || || ||| ||||||||||||| ||||||||||| |||
gtatgtgtcacgtcgtagctgcacggattcctaattttacgactgagacgtaaactttagtatgtgggt--tgcgaattta-atttactgtttacttatttgcagGACCCCACAAACCAAACTGCAATCGACAACTTCATGGTTCACGAACTTGACGGTACCCAAAACGAGTGGGGATGGTGCAAGCAGAAG

upper sequence: LOC_Os03g14450.2 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S1_527V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------gtatgtgttccctaccatatttctgtgcatattacagt--attaaattcatgtatgtttacatattctgttggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGATGGAACCAAAAACGAGTGGGGCTGGTGCAAGCAAAAG
                     |    ||||||  |  |     |||| |||  |  |   |||    | |   || || |||         |  ||| |||||||||||||| || ||||  ||||||||||||||||||||  |||| || || ||| | ||||||||||| ||||||||||| |||
gtacgcgttacgtcgtggcaatgcaggttcccgtcttttgacttgtgaataacattgcgcatttgggtta-aaatattaacacgcctgcacgatttttcagGACCCTACAGATCAAACTGGAATTGACAACTTCATGGTTCATGAACTTGACGGTACCCAGAACGAGTGGGGGTGGTGCAAGCAGAAG

upper sequence: LOC_Os03g14450.2 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ14601 (Selaginella moellendorffii), 3'ss of exon 4
gtatgtgttccctaccatatttctgtgcatattacagtattaaattcatgtatgtttacatattctgttggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGATGGAACCAAAAACGAGTGGGGCTGGTGCAAGCAAAAG
                    |   |    ||| | || |||  |    |  |  || ||| | |||      | | ||||| || || || || ||||  ||||||||||||||||||||  | || ||||||||  ||||| | ||||||||||||||||| |||
-------------------gtaaaggatttatcaaagaattctagc--tccaacttaacaaaatct------tgtacagGATCCGACCGATCAAACTGGTATTGACAACTTCATGGTTCACGAGCTCGATGGAACACAAAACAAATGGGGCTGGTGCAAGCAGAAG

upper sequence: LOC_Os03g14450.2 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ32861 (Selaginella moellendorffii), 3'ss of exon 4
gtatgtgttccctaccatatttctgtgcatattacagtattaaattcatgtatgtttacatattctgttggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGATGGAACCAAAAACGAGTGGGGCTGGTGCAAGCAAAAG
                    |   |    ||| | || |||  |    |  |  || ||| | |||      | | ||||| || || || || ||||  ||||||||||||||||||||  | || ||||||||  ||||| | ||||||||||||||||| |||
-------------------gtaacggatttatcaaagaattctagc--tccaacttaacaaaatct------tgtacagGATCCGACCGATCAAACTGGTATTGACAACTTCATGGTTCACGAGCTCGATGGAACACAAAACAAATGGGGCTGGTGCAAGCAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88426468|gb|CI576710.1|CI576710
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88301205|gb|CI594731.1|CI594731
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|58661980|gb|CK050660.1|CK050660
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATCGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|5701699|gb|AU063506.2|AU063506
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88695201|gb|CI739239.1|CI739239
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAG
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAG
EST: gi|13895987|gb|AU182323.1|AU182323
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88351968|gb|CI625968.1|CI625968
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|117233450|gb|CT848145.1|CT848145
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATCGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88352980|gb|CI630158.1|CI630158
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTC
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTC
EST: gi|88315321|gb|CI613590.1|CI613590
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAAGTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|4878131|gb|AU062430.1|AU062430
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACA
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACA
EST: gi|88427267|gb|CI586815.1|CI586815
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88430123|gb|CI565136.1|CI565136
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGA
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGA
EST: gi|27553945|gb|CA997845.1|CA997845
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|29678593|gb|CB674868.1|CB674868
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88744176|gb|CI767536.1|CI767536
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGG
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGG
EST: gi|88443516|gb|CI596983.1|CI596983
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88692735|gb|CI736310.1|CI736310
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88360198|gb|CI610312.1|CI610312
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGAC
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGAC
EST: gi|88388974|gb|CI595208.1|CI595208
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88425382|gb|CI567102.1|CI567102
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|56158086|gb|C72608.2|C72608
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCA-CTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88300608|gb|CI587412.1|CI587412
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88398014|gb|CI585517.1|CI585517
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88724710|gb|CI747969.1|CI747969
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88728882|gb|CI752392.1|CI752392
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAAC
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAAC
EST: gi|88393823|gb|CI621318.1|CI621318
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|58600258|gb|CK010786.1|CK010786
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATCGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88695504|gb|CI737542.1|CI737542
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCA
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCA
EST: gi|88388874|gb|CI592762.1|CI592762
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88390763|gb|CI610989.1|CI610989
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88372233|gb|CI619563.1|CI619563
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|4880550|gb|AU064849.1|AU064849
EST:     GCTGTTGACANTGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88696367|gb|CI739942.1|CI739942
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGAC
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGAC
EST: gi|88354348|gb|CI624738.1|CI624738
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGG-AAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88721933|gb|CI743445.1|CI743445
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88370957|gb|CI595069.1|CI595069
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCAT
EST: gi|88421393|gb|CI569238.1|CI569238
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACA-CTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88424448|gb|CI608034.1|CI608034
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88571245|gb|CI662618.1|CI662618
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|4879156|gb|AU063455.1|AU063455
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTNGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACA
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATT-GATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACA
EST: gi|88724437|gb|CI747696.1|CI747696
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88424498|gb|CI608084.1|CI608084
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|27553947|gb|CA997847.1|CA997847
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88300718|gb|CI589710.1|CI589710
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|32947868|gb|BP184440.1|BP184440
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88726581|gb|CI750236.1|CI750236
EST:     GCTGTCGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAAGAGACTGTCATTGACAACTTCATGGTTCAGCAACTGG
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGG
EST: gi|88740039|gb|CI763547.1|CI763547
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTC
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTC
EST: gi|58658595|gb|CK047275.1|CK047275
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATCGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|428929|gb|D25085.1|D25085
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGANCAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88692197|gb|CI735772.1|CI735772
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88730308|gb|CI753922.1|CI753922
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88348501|gb|CI629990.1|CI629990
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCACCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|568321|gb|D39165.1|D39165
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTTGGA
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACT-GGA
EST: gi|88390958|gb|CI592866.1|CI592866
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|38565671|gb|CK085124.1|CK085124
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT
EST: gi|88347145|gb|CI631225.1|CI631225
EST:     GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAG                         GACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAANTGGAT
genomic: GCTGTTGACAATGTGAACTCTATTATTGGACCAGCATTGATTGGCAAGgtatgtgttc ... ggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcatattacagtattaaattcatgtatgtttacatattctgttggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGATGGAACCAAAAACGAGTGGGGCTGGTGCAAGCAAAAG
             tattaaattcatgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtgttccctaccatatttctgtgcatattacagtattaaattcatgtatgtttacatattctgttggctttgcagGACCCTACAGAACAGACTGTCATTGACAACTTCATGGTTCAGCAACTGGATGGAACCAAAAACGAGTGGGGCTGGTGCAAGCAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA