1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taccgtttgttgcttattgtcattgcttttgatttgatcctatgatgcttccttttacactgcatggaaaactctcagatactaacttggttttatgcagGTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG
species | Oryza sativa |
transcript | LOC_Os03g13790.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTG GTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAAEST: gi|58666001|gb|CK054687.1|CK054687
genomic: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTGgtaattaaat ... ttttatgcagGTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAA
EST: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTG GTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAAEST: gi|29618831|gb|CB623843.1|CB623843
genomic: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTGgtaattaaat ... ttttatgcagGTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAA
EST: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTG GTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAAEST: gi|29617184|gb|CB622196.1|CB622196
genomic: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTGgtaattaaat ... ttttatgcagGTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAA
EST: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTG GTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCTAAACTGCATCTGAAEST: gi|88337044|gb|CI628130.1|CI628130
genomic: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTGgtaattaaat ... ttttatgcagGTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAA
EST: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTG GTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAA
genomic: TCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTGgtaattaaat ... ttttatgcagGTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAA
tgcttccttttacactgcatggaaaactctcagatactaacttggttttatgcagGTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG
tactaac putative branch site (score: 12)
ttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccgtttgttgcttattgtcattgcttttgatttgatcctatgatgcttccttttacactgcatggaaaactctcagatactaacttggttttatgcagGTGGTCTCTGCTTGAAAAATTTAGCTGCAGTGCATCAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC