1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaaaggatctttgatccctattcacagaatcccactgttgccatttttttctgttctctcacatttataggttacttactgcctatccaatttttgcagGTGTTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTGCTACTGAACTTGGCATTGATAAATTTTGGACTTGCTTTTCTGAGAAAGCG
species | Oryza sativa |
transcript | LOC_Os03g10190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATCACGTGGATCTTTGCAAGATGCTTGACATTGTAGCTTTGGAGAAAG GTGTTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTGCEST: gi|58694443|gb|CK083130.1|CK083130
genomic: GAATCACGTGGATCTTTGCAAGATGCTTGACATTGTAGCTTTGGAGAAAGgtatatgcta ... atttttgcagGTGTTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTGC
EST: GAATCACGTGGATCTTTGCAAGATGCTTGACATTGTAGCTTTGGAGAAGG GTGTTGATGTAGCAGGTGGAAGGGGTTACTATTTACAGGATGAAGGTGTGC
genomic: GAATCACGTGGATCTTTGCAAGATGCTTGACATTGTAGCTTTGGAGAAAGgtatatgcta ... atttttgcagGTGTTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTGC
ttttttctgttctctcacatttataggttacttactgcctatccaatttttgcagGTGTTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTGCTACTGAACTTGGCATTGATAAATTTTGGACTTGCTTTTCTGAGAAAGCG
tacttac putative branch site (score: 26)
tttttgc putative PPT
acatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaggatctttgatccctattcacagaatcccactgttgccatttttttctgttctctcacatttataggttacttactgcctatccaatttttgcagGTGTTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTGCTACTGAACTTGGCATTGATAAATTTTGGACTTGCTTTTCTGAGAAAGCG
aaaaagga
- - - - - - tgatccc
- - - - - - - - - - - -cacagaa
- - - - - - - - - - - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgcc