1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataattatttttttaaaaaaaaaagtcaacggtgtgatatattaaaaaattgaggtatatcagttaacctactcctttctgtcgattggaatgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGGTCTCCAGC
species | Oryza sativa |
transcript | LOC_Os03g09140.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAG GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATEST: gi|33682508|gb|CF310747.1|CF310747
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAG GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
aaaattgaggtatatcagttaacctactcctttctgtcgattggaatgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGGTCTCCAGC
agttaac putative branch site (score: 11)
tatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattatttttttaaaaaaaaaagtcaacggtgtgatatattaaaaaattgaggtatatcagttaacctactcctttctgtcgattggaatgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGGTCTCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - tgtgata
- - - - - - - - - - - - - - - - - - - - - -aaaaaat