1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgattttttatatgatactttttacataatcgaaagattgtagctttcctcagctttttatctgaaagaacttactgatatggcgatcttgttgatacatgaacatgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTATGACACTGTCCGGAAGGCTGGTGGTGTTTGTATAGCTGATGAAGTCCAGA
species | Oryza sativa |
transcript | LOC_Os03g07570.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGGGTTTCATTGCTGAAACTTTCCAA GGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTATEST: gi|84117000|gb|CD150767.1|CD150767
genomic: TGCGGGTTTCATTGCTGAAACTTTCCAAgtatgatttt ... atgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTAT
EST: GTACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAA GGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTACGCTTAEST: gi|116875647|gb|EC366155.1|EC366155
genomic: GTACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAAgtatgatttt ... atgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTA-GCTTA
EST: ACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAA GGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTATEST: gi|117224901|gb|CT845968.1|CT845968
genomic: ACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAAgtatgatttt ... atgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTAT
EST: ATTATGGTACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAA GGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTAT
genomic: ATTATGGTACCTCCGGAAGGGTTGCGGGTTTCATTGCTGAAACTTTCCAAgtatgatttt ... atgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattttttatatgatactttttacataatcgaaagattgtagctttcctcagctttttatctgaaagaacttactgatatggcgatcttgttgatacatgaacatgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTATGACACTGTCCGGAAGGCTGGTGGTGTTTGTATAGCTGATGAAGTCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT