1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctgtgatagcacaggtttgagaacattagtgcttattaattatatggaaatatctgttacatattttgcttgctatttattacttgttgtgataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAATTGCGAAGAACAGGCCCATGT
species | Oryza sativa |
transcript | LOC_Os03g06120.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAAEST: gi|58673353|gb|CK062039.1|CK062039
genomic: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
EST: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAAEST: gi|44674180|gb|CR287614.1|CR287614
genomic: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
EST: GACGAGTAGG-ATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTGTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAAEST: gi|87021652|gb|CI276051.1|CI276051
genomic: GACGAGT-GGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
EST: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAAEST: gi|33803494|gb|CF327622.1|CF327622
genomic: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
EST: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAAEST: gi|25806375|gb|CA762336.1|CA762336
genomic: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
EST: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAAEST: gi|89169017|gb|CI020557.1|CI020557
genomic: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
EST: TGGTTGCTGTTCAGAGCCATCTTTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAAEST: gi|27548516|gb|CA766467.2|CA766467
genomic: TGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
EST: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAAEST: gi|29637808|gb|CB642817.1|CB642817
genomic: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
EST: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGT GTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
genomic: CGACGAGTGGCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTgtatgtccat ... gataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAA
ggaaatatctgttacatattttgcttgctatttattacttgttgtgataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAATTGCGAAGAACAGGCCCATGT
tgataac putative branch site (score: 2)
tatttattacttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgatagcacaggtttgagaacattagtgcttattaattatatggaaatatctgttacatattttgcttgctatttattacttgttgtgataacacagGTTTGAGAACATTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAATTGCGAAGAACAGGCCCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC