1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attacctctaatgctttctgtgcccatttatattaacaagtatgctaaatcattatcatagcacacacttatgagtctgctggattcattttattttcagGAACCCTAGAGAACTACTGTCTGGAATCCGAACTTCTCGTCTAAGAGATCGTAAAAAAGAAGACCGAGAACTGTTGGTCAAACAGGAATTCTTGCAGGAT
species | Oryza sativa |
transcript | LOC_Os03g05680.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTCCCATCAACAACTATTGTACTTGCTAGCAGTTTCATTTATATCCAG GAACCCTAGAGAACTACTGTCTGGAATCCGAACTTCTCGTCTAAGAGATCG
genomic: CTCTCCCATCAACAACTATTGTACTTGCTAGCAGTTTCATTTATATCCAGgttttttttt ... ttattttcagGAACCCTAGAGAACTACTGTCTGGAATCCGAACTTCTCGTCTAAGAGATCG
taaatcattatcatagcacacacttatgagtctgctggattcattttattttcagGAACCCTAGAGAACTACTGTCTGGAATCCGAACTTCTCGTCTAAGAGATCGTAAAAAAGAAGACCGAGAACTGTTGGTCAAACAGGAATTCTTGCAGGAT
tgctaaa putative branch site (score: 14)
ttcattttattttc putative PPT
attcattttattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacctctaatgctttctgtgcccatttatattaacaagtatgctaaatcattatcatagcacacacttatgagtctgctggattcattttattttcagGAACCCTAGAGAACTACTGTCTGGAATCCGAACTTCTCGTCTAAGAGATCGTAAAAAAGAAGACCGAGAACTGTTGGTCAAACAGGAATTCTTGCAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - -tgctttc
- - - - - - - - - tgtgccc
- - - - - - - - - - - - - - - - - - - agtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgctg