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gtgaacactgatttctttatgaagcatatttttacattgctttagcaaatagttctgtttcagtaacatttggtatcatattcctttcagGTTTTTGCAGTGGATATACACCCAG
species | Oryza sativa |
transcript | LOC_Os03g04140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGGTCGTAAAGTTCTGGCATTGGCACTGCAGAGCCGTATCAGTGAG GTTTTTGCAGTGGATATACACCCAGEST: gi|84117447|gb|CD151214.1|CD151214
genomic: ATCAAGGTCGTAAAGTTCTGGCATTGGCACTGCAGAGCCGTATCAGTGAGgtgaacactg ... ttcctttcagGTTTTTGCAGTGGATATACACCCAG
EST: ATCAAGGTCGTAAAGTTCTGGCATTGGCACTGCACAGCCGTATCAGTGAG GTTTTTGCAGTGGATATACACCCAGEST: gi|58693702|gb|CK082389.1|CK082389
genomic: ATCAAGGTCGTAAAGTTCTGGCATTGGCACTGCAGAGCCGTATCAGTGAGgtgaacactg ... ttcctttcagGTTTTTGCAGTGGATATACACCCAG
EST: ATCAAGGTCGTAAAGTTCTGGCATTGGCACTGCAGAGCCGTATCAGTGAG GTTTTTGCAGTGGATATACACCCAGEST: gi|29681231|gb|CB677506.1|CB677506
genomic: ATCAAGGTCGTAAAGTTCTGGCATTGGCACTGCAGAGCCGTATCAGTGAGgtgaacactg ... ttcctttcagGTTTTTGCAGTGGATATACACCCAG
EST: ATCAAGGTCGTAAAGTTCTGGCATTGGCACTGCAGAGCCGTATCAGTGAG GTTTTTGCAGTGGATATACACCCAGEST: gi|38480201|gb|CF964290.1|CF964290
genomic: ATCAAGGTCGTAAAGTTCTGGCATTGGCACTGCAGAGCCGTATCAGTGAGgtgaacactg ... ttcctttcagGTTTTTGCAGTGGATATACACCCAG
EST: GTATCAGTGAG G-TTTTGCAGTGGATATACACCCAG
genomic: GTATCAGTGAGgtgaacactg ... ttcctttcagGTTTTTGCAGTGGATATACACCCAG
attgctttagcaaatagttctgtttcagtaacatttggtatcatattcctttcagGTTTTTGCAGTGGATATACACCCAG
cagtaac putative branch site (score: 33)
tattcctttc putative PPT
tatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacactgatttctttatgaagcatatttttacattgctttagcaaatagttctgtttcagtaacatttggtatcatattcctttcagGTTTTTGCAGTGGATATACACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA