1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttagattgttgaattattgatagtatatattttggtgcttcattgaaattaatttagaatactttaatggcacgacttatgagagtactttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG
species | Oryza sativa |
transcript | LOC_Os03g03920.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCCAATCAGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|86413823|gb|CI068030.1|CI068030
genomic: ACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: AGAGCGAACCCAATCAGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|88850993|gb|CI096383.1|CI096383
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: AGAGCGAACCCAATCAGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|157650080|gb|EX449714.1|EX449714
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: GCGAACCCAATCAGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|87020032|gb|CI277764.1|CI277764
genomic: GCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: AGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|86486868|gb|CI129501.1|CI129501
genomic: AGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: AGAGCGAACCCAATCAGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|88849094|gb|CI087616.1|CI087616
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: AGAGCGAACCCAATCAGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|86429591|gb|CI076272.1|CI076272
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: CCCAATCAGGTGCTGGTGCAG GCAATACTAACCTCTACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|86482742|gb|CI125375.1|CI125375
genomic: CCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: AGAGCGAACCCAATCAGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGEST: gi|89176589|gb|CI111305.1|CI111305
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: AGAGCGAACCCGATCAGGTGCTGGTGCAG GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
gaaattaatttagaatactttaatggcacgacttatgagagtactttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG
taatttagaatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagattgttgaattattgatagtatatattttggtgcttcattgaaattaatttagaatactttaatggcacgacttatgagagtactttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG