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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatttgtgttgacttttgcaatatggatacaacctttgtactaaatttgtccagaaacttgatattcaaatacggtaatatttgtggatggaatgtgcagGTCGTCAATGGCTTCTTCTGTAAGGGAAGTCCTGTCCATGCTCTTGATCAAGGACCTGATCATTCCACAGCGCTTGGT

Basic information

species Oryza sativa
transcript LOC_Os03g03400.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682220|gb|CK070907.1|CK070907
EST:     GGGGCTGATG-CGTGATTGCTGTTGGTGGTGATGGAACACTTCATGAG                         GTCGTCGATGG-TTCTTCTGTAAGGGAAGTCCTGTCCATGCTCTTGATCAA
genomic: GGGGCTGATGCCGTGATTGCTGTTGGTGGTGATGGAACACTTCATGAGgtattatttg ... gaatgtgcagGTCGTCAATGGCTTCTTCTGTAAGGGAAGTCCTGTCCATGCTCTTGATCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtccagaaacttgatattcaaatacggtaatatttgtggatggaatgtgcagGTCGTCAATGGCTTCTTCTGTAAGGGAAGTCCTGTCCATGCTCTTGATCAAGGACCTGATCATTCCACAGCGCTTGGT
           acttgat  putative branch site (score: 5)
             ttgatattcaaata  TA-rich tract