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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttacttggatatattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttagGCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAG

Basic information

species Oryza sativa
transcript LOC_Os03g02850.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02850.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G171469_T02 (Zea mays), 3'ss of exon 4
gttag-ttttacttggata-tattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttagGCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAG
||||| ||| | ||  | | | |||||   | || |  ||  || |  ||| ||||||| |  ||| ||   |||| |||||||| ||| |||| |||||||||||| | |||||||| || |||||||||||| || | ||||  || |||
gttaggtttcagttcaacagttttttgacatggttctgtgaatgctgctgtgctcattgttgtatgctgatgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAATGGAATGATATATGTCATTCAG

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G426306_T01 (Zea mays), 3'ss of exon 5
---gttagtttta-cttggatatattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttagGCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAG
    ||  ||||| ||  | || |  |   | ||||    |   |||| |||| |   ||  ||  || |    ||   |||||||| || ||||| ||||||||||| |||||| |||| |||   ||||| || |||||||||||||| |||
gtatttccttttatctctgttagacctc--tattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctagGCACGTGCCATGTCGACTGATGGGCTTAGACCAACTTTCTATTGGATCAACGGTGTGGTCTATGCAATTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttagGCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAG
                   tttttgtt  TA-rich tract