1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attcaataagcacactgcccaacactgataaagaagtataatgccattcagattctgtacaatcctctgaaatctaattctgtacatggttcataaacagGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATG
species | Oryza sativa |
transcript | LOC_Os03g02690.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGTTGATTTTAGTGAACCTTCAACTGTTTATGATAATGTCAA-CAG GCAGCGGGATTTEST: gi|27546884|gb|CA764989.2|CA764989
genomic: TGGTGGTTGATTTTAGTGAACCTTCAACTGTTTATGATAATGTCAAACAGgtaagcaatc ... tcataaacagGCAGCGGCATTT
EST: TGGTGGTTGATTTTAGTGAACCTTCAACTGTTTATGATAATGTCAAACAG GCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAEST: gi|58606567|gb|CK034600.1|CK034600
genomic: TGGTGGTTGATTTTAGTGAACCTTCAACTGTTTATGATAATGTCAAACAGgtaagcaatc ... tcataaacagGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTA
EST: TGGTGGTTGATTTTAGTGAACCTTCAACTGTTTATGATAATGTCAAACAG GCAGCGGCATTTGGTTTEST: gi|29684781|gb|CB681056.1|CB681056
genomic: TGGTGGTTGATTTTAGTGAACCTTCAACTGTTTATGATAATGTCAAACAGgtaagcaatc ... tcataaacagGCAGCGGCATTTGGTTT
EST: TGGTGGTTGATTTTAGTGAACCTTCAACTGTTTATGATAATGTCAAACAG GCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTA
genomic: TGGTGGTTGATTTTAGTGAACCTTCAACTGTTTATGATAATGTCAAACAGgtaagcaatc ... tcataaacagGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTA
attcagattctgtacaatcctctgaaatctaattctgtacatggttcataaacagGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATG
atctaat putative branch site (score: 3)
aaatctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcaataagcacactgcccaacactgataaagaagtataatgccattcagattctgtacaatcctctgaaatctaattctgtacatggttcataaacagGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATG
- - - - - - - ctgccca
- - - - - - - - - - - - - -ataaagaa
- - - - - - - - - - - - - - - - - - - - - gccattc
- - - - - - - - - - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacatg