1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcttaactcatcttattggattgacagataaacagatatgtatcaaagttgacaatcggcattctgacatcatccttgaaatctttagATGAAAAAATTGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAATGTATACTTTCGTCTTCCTCTGGACTCCGGCGTTGAGCCCAAATGAAGA
species | Oryza sativa |
transcript | LOC_Os03g02380.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: C-AGGATTTGATGTCCCAGTTCAAGGTTGCAGCCAAAGCAATTGCTTCAG ATGAAAAAA-TGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAAEST: gi|29656297|gb|CB652572.1|CB652572
genomic: CAAGGATTTGATGTCCCAGTTCAAGGTTGCAGCCAAAGCAATTGCTTCAGgtatgcttaa ... aaatctttagATGAAAAAATTGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAA
EST: CAAGGATTTGATGTCCCAGTTCAAGGTTGCAGCCAAAGCAATTGCTTCAG ATGAAAAAATTGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAAEST: gi|87005474|gb|CI285696.1|CI285696
genomic: CAAGGATTTGATGTCCCAGTTCAAGGTTGCAGCCAAAGCAATTGCTTCAGgtatgcttaa ... aaatctttagATGAAAAAATTGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAA
EST: CAAGGATTTGATGTCCCAGTTCAAGGTTGCAGCCAAAGCAATTGCTTCAG ATGAAAAAATTGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAA
genomic: CAAGGATTTGATGTCCCAGTTCAAGGTTGCAGCCAAAGCAATTGCTTCAGgtatgcttaa ... aaatctttagATGAAAAAATTGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAA
agatatgtatcaaagttgacaatcggcattctgacatcatccttgaaatctttagATGAAAAAATTGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAATGTATACTTTCGTCTTCCTCTGGACTCCGGCGTTGAGCCCAAATGAAGA
ttctgac putative branch site (score: 2)
tcttt putative PPT
aaatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttaactcatcttattggattgacagataaacagatatgtatcaaagttgacaatcggcattctgacatcatccttgaaatctttagATGAAAAAATTGCATTACTGGGAGCCATACAGTCATTGTTTGAGGGCTCAATGTATACTTTCGTCTTCCTCTGGACTCCGGCGTTGAGCCCAAATGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA