1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaccctttaaacgcaaatttgcatctgcgtcgttgaccctatgttattcttcaatcctgcataatggtgttctcatctttggctttctaattttgacagAGCTGCAAGATCTGCTTCCAACAATCATCAACCAGTTGG
species | Oryza sativa |
transcript | LOC_Os03g01910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCATTGGTGCAAATACATGGGTAGTGAGTGGA-CACCACAGACGANGA AGCTTGCAAGATCTGCTTEST: gi|218482454|gb|FG952463.1|FG952463
genomic: ATCCATTGGTGCAAATACATGGGTAGTGAGTGGAACACCACAGACGAAGAgtaagtcatt ... attttgacagAGCT-GCAAGATCTGCTT
EST: ATCTATTGGTGCAAATACATGGGTAGTGAGTGGAACACCACAGACGAAGA AGTTGCAAGATCTGCTTCCAACAATCATCAACCAGTTGG
genomic: ATCCATTGGTGCAAATACATGGGTAGTGAGTGGAACACCACAGACGAAGAgtaagtcatt ... attttgacagAGCTGCAAGATCTGCTTCCAACAATCATCAACCAGTTGG
tattcttcaatcctgcataatggtgttctcatctttggctttctaattttgacagAGCTGCAAGATCTGCTTCCAACAATCATCAACCAGTTGG
ttctaat putative branch site (score: 39)
tttctaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaccctttaaacgcaaatttgcatctgcgtcgttgaccctatgttattcttcaatcctgcataatggtgttctcatctttggctttctaattttgacagAGCTGCAAGATCTGCTTCCAACAATCATCAACCAGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - -acgcaaa
- - - - - - - - - - - catctgc
- - - - - - - - - - - - - - - - - - - -ctatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgca