1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttgcttcatgtccattatctatttctgcttaattagatttctttcgaagtcctattacagattacttaccttacctacatggcttgtaattgtaaatggtactacagtaatgatctgtgcagtaattggcatgcgttttcttttccttattctcacgttgtagagcgaatataactgaaattgtagGGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTG
species | Oryza sativa |
transcript | LOC_Os03g01014.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAACTGCTAGCTCAATTGGAGAGGAGCTATTCTATCGTGTCGCTGTCCAG GGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCTEST: gi|29684277|gb|CB680552.1|CB680552
genomic: TAACTGCTAGCTCAATTGGAGAGGAGCTATTCTATCGTGTCGCTGTCCAGgtatttgctt ... gaaattgtagGGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCT
EST: ACTGCTAGCTCAATTGGAGAGGAGCTTCATTCTATCGTGTCGCTGTCCAG GGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCTEST: gi|29669725|gb|CB666000.1|CB666000
genomic: ACTGCTAGCTCAATTGGAGAGGAGC-T-ATTCTATCGTGTCGCTGTCCAGgtatttgctt ... gaaattgtagGGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCT
EST: CTAGCTCAATTGGAGAGGAGCTATTCTATCGTGTCGCTGTCCAG GGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCT
genomic: CTAGCTCAATTGGAGAGGAGCTATTCTATCGTGTCGCTGTCCAGgtatttgctt ... gaaattgtagGGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCT
tgcgttttcttttccttattctcacgttgtagagcgaatataactgaaattgtagGGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTG
aatataactgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgcttcatgtccattatctatttctgcttaattagatttctttcgaagtcctattacagattacttaccttacctacatggcttgtaattgtaaatggtactacagtaatgatctgtgcagtaattggcatgcgttttcttttccttattctcacgttgtagagcgaatataactgaaattgtagGGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA