1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcaatattcttttgcttttctgttcattgtgcttttattaatcacttgcgtacttgatgtaatccggcggtgcttaaccattaagttactgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG
species | Oryza sativa |
transcript | LOC_Os02g58730.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|30228239|gb|CB966130.1|CB966130
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|11233552|gb|AU164964.1|AU164964
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|58593555|gb|CF991863.1|CF991863
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|163918056|gb|EG713984.1|EG713984
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: TCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|88832933|gb|CI369823.1|CI369823
genomic: TCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|86861523|gb|CI328204.1|CI328204
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: CGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCCTGGTGCTGTACCTEST: gi|25807453|gb|CA763414.1|CA763414
genomic: CGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCA-CCCTGGTGCTGTACCT
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|30229558|gb|CB967449.1|CB967449
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCNATAATTCTCGTTGGAACNAAGCTTG ATCTGCGGGATGATAAGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|117226289|gb|CT846197.1|CT846197
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTTGTAGATCACCCTGGTGCTGTACCTAEST: gi|32947879|gb|BP184451.1|BP184451
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|163920990|gb|EG710403.1|EG710403
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATEST: gi|33802327|gb|CF327037.1|CF327037
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGAT
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|86415824|gb|CI029835.1|CI029835
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCCATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|218499440|gb|FG950955.1|FG950955
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAAATCACCCTGGTGCTGTACCTAEST: gi|218494722|gb|FG969779.1|FG969779
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|163929342|gb|EG713767.1|EG713767
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: GTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|7134822|gb|AU082691.1|AU082691
genomic: GTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|25802725|gb|CA758686.1|CA758686
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCCTG ATCTGCGGGATGATTAAGCAATTTTT-GTAGATCACCCTGGTGCTGTACCTEST: gi|58591734|gb|CF990042.1|CF990042
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGAT-AAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCT
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGEST: gi|86599058|gb|CI355675.1|CI355675
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGG
EST: GGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|3763167|gb|AU029919.1|AU029919
genomic: GGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|2431385|gb|C73805.1|C73805
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|14980894|gb|BI305572.1|BI305572
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|88251317|gb|CI349745.1|CI349745
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: TGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACACTGGTGCTGTACCTAEST: gi|58594206|gb|CF992514.1|CF992514
genomic: TGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|33802329|gb|CF327038.1|CF327038
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCCTGGTGCTGTACCTEST: gi|7134824|gb|AU082692.1|AU082692
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCA-CCCTGGTGCTGTACCT
EST: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTAEST: gi|86598350|gb|CI354967.1|CI354967
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: ATAATTCTAGTT-GAACAAAGCTTA ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: ATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
acttgcgtacttgatgtaatccggcggtgcttaaccattaagttactgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG
gcttaac putative branch site (score: 3)
attaagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaatattcttttgcttttctgttcattgtgcttttattaatcacttgcgtacttgatgtaatccggcggtgcttaaccattaagttactgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA