1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ccagctgccatctacatatttaacccgtcattgtgattttactttaccacatgctactttttgtttctaactatttcttcaacatttcttttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
species | Oryza sativa |
transcript | LOC_Os02g58590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAAGACGAAGAACGTGTACACCTCAGGA-TTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTTAGTAAACAACAATGTGEST: gi|33795166|gb|CF323456.1|CF323456
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
EST: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTTAGTAAACAACAATGTGEST: gi|29626072|gb|CB631083.1|CB631083
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
EST: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTTAGTAAACAACAATGTGEST: gi|117216832|gb|CT845224.1|CT845224
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
EST: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTEST: gi|29628398|gb|CB633409.1|CB633409
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCT
EST: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTTAGTAAACAACAATGTGEST: gi|58674189|gb|CK062875.1|CK062875
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
EST: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTTAGTAAACAACAATGTGEST: gi|29666803|gb|CB663078.1|CB663078
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
EST: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTTAGTAAACAACAATGTGEST: gi|33797216|gb|CF324472.1|CF324472
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
EST: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTTAGTAAACAACAATGTGEST: gi|29681006|gb|CB677281.1|CB677281
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
EST: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAA AAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
genomic: CCAAGACGAAGAACGTGTACACCTCAAGATTTTAATCCAAGATCTCGAAAgtatgaaaat ... ttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
accacatgctactttttgtttctaactatttcttcaacatttcttttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
ttctaac putative branch site (score: 48)
catttctttt putative PPT
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagctgccatctacatatttaacccgtcattgtgattttactttaccacatgctactttttgtttctaactatttcttcaacatttcttttggatgcagAAAGGAGCGTGCAGACCTTAGTAAACAACAATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- agctgcc
- - - - - - - - - - - - - - - ttgtgat
- - - - - - - - - - - - - - - - - - - - - - - ccacatg