1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttgacaaatgcagaattaacattttaagatatgtatgtcctgttatatttagccattcagttgctttgctaatagtttggcgattccgtgcagAAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAGGATGGTCTTGACAAAGATGCTATCAGCAAGAGGCTTGAGGAGATATACA
species | Oryza sativa |
transcript | LOC_Os02g58020.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGTTCAACCGCAG AAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAGEST: gi|29664091|gb|CB660366.1|CB660366
genomic: ATCTGGTTCAACGGCAGgttgacaaat ... ttccgtgcagAAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAG
EST: TTGAACGGGTTCAACTTTTGCAAGAAGAAGCTCATCTGGTTCAACGGCAG AAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAGEST: gi|29644366|gb|CB649373.1|CB649373
genomic: TTGAACGGGTTCAACTTTTGCAAGAAGAAGCTCATCTGGTTCAACGGCAGgttgacaaat ... ttccgtgcagAAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAG
EST: TTGAACGGGTTCAACTTTTGCAAGAAGAAGCTCATCTGGTTCAACGGCAG AAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAGEST: gi|88311922|gb|CI577528.1|CI577528
genomic: TTGAACGGGTTCAACTTTTGCAAGAAGAAGCTCATCTGGTTCAACGGCAGgttgacaaat ... ttccgtgcagAAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAG
EST: GCAAGAAGAAGCTCATCTGGTTCAACGGCAG AAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAG
genomic: GCAAGAAGAAGCTCATCTGGTTCAACGGCAGgttgacaaat ... ttccgtgcagAAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAG
cctgttatatttagccattcagttgctttgctaatagtttggcgattccgtgcagAAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAGGATGGTCTTGACAAAGATGCTATCAGCAAGAGGCTTGAGGAGATATACA
tgctaat putative branch site (score: 2)
tatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgacaaatgcagaattaacattttaagatatgtatgtcctgttatatttagccattcagttgctttgctaatagtttggcgattccgtgcagAAAGATCTAGAGTATGAGGCTGAGTTTGAGCAGAGCGCGTCCAAAAGCAAGGATGGTCTTGACAAAGATGCTATCAGCAAGAGGCTTGAGGAGATATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT