1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctctttccgtttcagtgatcatgttgaatgcgttcacatgctatgtccattcagttactgcatgatcattttatctgaattcctcttcttttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACAGGTGCCGTATAATAATGCTGTGAACTATGGACCTAATGGGTATGGAGG
species | Oryza sativa |
transcript | LOC_Os02g57640.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|29664586|gb|CB660861.1|CB660861
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: TACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|88954647|gb|CI720176.1|CI720176
genomic: TACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|29682210|gb|CB678485.1|CB678485
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|58689438|gb|CK078125.1|CK078125
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|88908938|gb|CI716663.1|CI716663
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|89171724|gb|CI720783.1|CI720783
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|89171464|gb|CI720523.1|CI720523
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|88594576|gb|CI714534.1|CI714534
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|88669112|gb|CI720069.1|CI720069
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|88668291|gb|CI723030.1|CI723030
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACEST: gi|29686277|gb|CB682552.1|CB682552
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
EST: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAG GCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
genomic: GGAGGACGTTCACTACCCACCTAATCTGAGTTCCCCATTTCCATATGCAGgtaaacaaat ... ttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCAC
tccattcagttactgcatgatcattttatctgaattcctcttcttttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACAGGTGCCGTATAATAATGCTGTGAACTATGGACCTAATGGGTATGGAGG
ttcctcttcttttgtt CT-rich tract
attttatctgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctttccgtttcagtgatcatgttgaatgcgttcacatgctatgtccattcagttactgcatgatcattttatctgaattcctcttcttttgttttcagGCCTTGGTTTCCCTAGTTACCCTGGTGTTCCTGTTGGGTATATGATCCCACAGGTGCCGTATAATAATGCTGTGAACTATGGACCTAATGGGTATGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - -atcatgt
- - - - - - - - - - - - tgaatgc
- - - - - - - - - - - - - - - - - - catgcta
- - - - - - - - - - - - - - - - - - - - - - - ccattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga