1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttttgccactagtaggattttagcactttaatcagctaaaacgcacccgtttaggttctaacctgatttgcgctcattttaccgacaatccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGG
species | Oryza sativa |
transcript | LOC_Os02g57250.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86535627|gb|CI175833.1|CI175833
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTT-AACAAGAGGCAGATEST: gi|89170905|gb|CI040182.1|CI040182
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86850814|gb|CI338790.1|CI338790
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|88838170|gb|CI372738.1|CI372738
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAAGAACCATTGCTTCAACAAGAGGCAAGEST: gi|14571418|gb|BI118786.1|BI118786
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCAC-AGAACCATTGCTTCAACAAGAGGC-AG
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCCGATACCAGTGAATTCACAGAACCATTGCTTCAACAAGAGGGCAGEST: gi|88286689|gb|CI517800.1|CI517800
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGC-GATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGG-CAG
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGTTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|88252911|gb|CI350336.1|CI350336
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTTTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGGCTTCAACAAGAGGCAGAEST: gi|88466011|gb|CI519884.1|CI519884
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATT-GCTTCAACAAGAGGCAGA
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86835880|gb|CI346077.1|CI346077
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|58688338|gb|CK077025.1|CK077025
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|58683213|gb|CK071900.1|CK071900
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|13165375|gb|AU174172.1|AU174172
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTNTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86863834|gb|CI332845.1|CI332845
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86510796|gb|CI153429.1|CI153429
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86904641|gb|CI321549.1|CI321549
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGCCAGATEST: gi|313079501|gb|HO213059.1|HO213059
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86873635|gb|CI330013.1|CI330013
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|88274579|gb|CI394985.1|CI394985
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: AGAGGGTGA-GATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCACATEST: gi|89176834|gb|CI013407.1|CI013407
genomic: AGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|88963014|gb|CI025500.1|CI025500
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|55409064|gb|CV721440.1|CV721440
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|88319682|gb|CI520725.1|CI520725
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGTTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|87034650|gb|CI189274.1|CI189274
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|29645716|gb|CB650723.1|CB650723
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86842406|gb|CI335293.1|CI335293
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|89194933|gb|CI003397.1|CI003397
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|88263818|gb|CI367592.1|CI367592
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|5456482|gb|AU075793.1|AU075793
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86879087|gb|CI315459.1|CI315459
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGTACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|86545878|gb|CI186084.1|CI186084
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|3761036|gb|C98290.1|C98290
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: GGTTGAGGATCATGAGGNCATCCAGATGCCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTNCAACAAGAGGCAGAEST: gi|29685040|gb|CB681315.1|CB681315
genomic: GGTTGAGGATCATGAGGACAT-CAGATG-CGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTT-CAACAAGAGGCAGA
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|88979064|gb|CI025572.1|CI025572
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|89198698|gb|CI003435.1|CI003435
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|88465390|gb|CI529610.1|CI529610
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCANCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATEST: gi|287065|gb|D15870.1|D15870
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
EST: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTG GTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
genomic: CTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGgttagattct ... tccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGAT
cacccgtttaggttctaacctgatttgcgctcattttaccgacaatccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGG
tcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttgccactagtaggattttagcactttaatcagctaaaacgcacccgtttaggttctaacctgatttgcgctcattttaccgacaatccgttgcagGTCAGCGATACCAGGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC