1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaactaccttatgtttggctagaggtattctcatggttaaatttgtgttagtgtagtgccaaagactgctatgaaactatgacacctgagatcaatacagGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAG
species | Oryza sativa |
transcript | LOC_Os02g56550.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAG GTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGEST: gi|27548820|gb|CA766802.2|CA766802
genomic: GACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgataccgt ... atcaatacagGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATG
EST: GACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAG GTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGEST: gi|23513576|gb|BU673203.1|BU673203
genomic: GACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgataccgt ... atcaatacagGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATG
EST: GACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAG GTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGEST: gi|33690072|gb|CF318311.1|CF318311
genomic: GACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgataccgt ... atcaatacagGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATG
EST: GACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAG GTACTCTTGCTTGATGAAATCACCGTTGAT
genomic: GACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgataccgt ... atcaatacagGTACTCTTGCTTGATGAAATCACCGTTGAT
tgttagtgtagtgccaaagactgctatgaaactatgacacctgagatcaatacagGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAG
tatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactaccttatgtttggctagaggtattctcatggttaaatttgtgttagtgtagtgccaaagactgctatgaaactatgacacctgagatcaatacagGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
aaactac
- - - - - atgtttg
- - - - - - - - - - - - - - - -catggtt
- - - - - - - - - - - - - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctga