1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacaagattctaaaatttcacattcctcgatacaaatttatactgtaaaattaaagctgctaacgtaatgcctacgatcttccatgaattttcagGATTCATTTGAGGATGACAAATCAAAAATCTTGATGATTCTCTGTGCAAGTCCTGACCCAAAGGAATTGCACAAGACAGTTTCTACATTGGAGTATGGTG
species | Oryza sativa |
transcript | LOC_Os02g56540.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGACTCCCATGTCCCATTTCGAGACAGCAAGCTCACAATGCTCTTGCAG GATTCATTTGAGGACGACAAATCAAAAATCTTGATGATTCTCTGTGCAAGTEST: gi|58671945|gb|CK060631.1|CK060631
genomic: GTGACTCCCATGTTCCATTTCGAGACAGCAAGCTCACAATGCTCTTGCAGgtacaagatt ... gaattttcagGATTCATTTGAGGATGACAAATCAAAAATCTTGATGATTCTCTGTGCAAGT
EST: CTCCCATGTCCCATTTCGAGACAGCAAGCTCACAATGCTCTTGCAG GATTCATTTGAGTGACGACAAATCAAAAATCTTGATGATTCTCTGTGCAAGEST: gi|58606121|gb|CK034154.1|CK034154
genomic: CTCCCATGTTCCATTTCGAGACAGCAAGCTCACAATGCTCTTGCAGgtacaagatt ... gaattttcagGATTCATTTGAG-GATGACAAATCAAAAATCTTGATGATTCTCTGTGCAAG
EST: GTGACTCCCATGTCCCATTTCGAGACAGCAAGCTCACAATGCTCTTGCAG GATTCATTTGAGGACGACAAATCAAAAATCTTGATGATTCTCTGTGCAAGT
genomic: GTGACTCCCATGTTCCATTTCGAGACAGCAAGCTCACAATGCTCTTGCAGgtacaagatt ... gaattttcagGATTCATTTGAGGATGACAAATCAAAAATCTTGATGATTCTCTGTGCAAGT
tactgtaaaattaaagctgctaacgtaatgcctacgatcttccatgaattttcagGATTCATTTGAGGATGACAAATCAAAAATCTTGATGATTCTCTGTGCAAGTCCTGACCCAAAGGAATTGCACAAGACAGTTTCTACATTGGAGTATGGTG
tgctaac putative branch site (score: 1)
ttttc putative PPT
taaaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaagattctaaaatttcacattcctcgatacaaatttatactgtaaaattaaagctgctaacgtaatgcctacgatcttccatgaattttcagGATTCATTTGAGGATGACAAATCAAAAATCTTGATGATTCTCTGTGCAAGTCCTGACCCAAAGGAATTGCACAAGACAGTTTCTACATTGGAGTATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG