1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acgtcttagctttcgtgaactagtttccatgttttgcacttccctttgcttattgcattactagtctatgtaagtgacatttatttacataacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGATTATATTGAAGTTTCAATGTGGCAGCAAAGAGTCCGCCTTTATATTATAA
species | Oryza sativa |
transcript | LOC_Os02g56210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAA GTTCTTGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGCAGATEST: gi|58597464|gb|CK007992.1|CK007992
genomic: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGAT
EST: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAA GTTCTTGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGATEST: gi|218484683|gb|FG956662.1|FG956662
genomic: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGAT
EST: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAA GTTCTTGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGATEST: gi|218481891|gb|FG948637.1|FG948637
genomic: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGAT
EST: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGATEST: gi|58599652|gb|CK010180.1|CK010180
genomic: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGAT
EST: GTGGAAAGAGGAGTTAAGATGAAGAAGATCATACATGTGCTGTTAGAGAA GTTCTTGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGAT
genomic: GTGGAAAGAGGAGTAAAGATGAAGAAGATCATACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGAT
ttgcttattgcattactagtctatgtaagtgacatttatttacataacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGATTATATTGAAGTTTCAATGTGGCAGCAAAGAGTCCGCCTTTATATTATAA
acataac putative branch site (score: 53)
atttatttacataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtcttagctttcgtgaactagtttccatgttttgcacttccctttgcttattgcattactagtctatgtaagtgacatttatttacataacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCGAAGCTTTTAAAATTGGAAGATTATATTGAAGTTTCAATGTGGCAGCAAAGAGTCCGCCTTTATATTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - ttccatg
- - - - - - - - - - - - - - - -ttttgca