1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgctctattatttttcattatatttgtgacacataatcatggcagtatttaacttattttttctttgtttgttcataattgacctcattccatgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAG
species | Oryza sativa |
transcript | LOC_Os02g55200.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|2427558|gb|C72021.1|C72021
genomic: TGTTAGGAATGCTTGGGGACTGCTGgtacggcaat ... catgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
EST: GAACTGTNTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|58589478|gb|CF987786.1|CF987786
genomic: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtacggcaat ... catgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
EST: AGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTAGTAGTGAAGAAAGTGEST: gi|218487528|gb|FG948329.1|FG948329
genomic: AGGAATGCTTGGGGACTGCTGgtacggcaat ... catgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTA-TGAAGAAAGTG
EST: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|8956748|gb|BE230551.1|BE230551
genomic: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtacggcaat ... catgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
EST: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
genomic: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtacggcaat ... catgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
tatttaacttattttttctttgtttgttcataattgacctcattccatgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAG
aattgac putative branch site (score: 48)
cctcattcc CT-rich tract
ttattttttctttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctctattatttttcattatatttgtgacacataatcatggcagtatttaacttattttttctttgtttgttcataattgacctcattccatgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAGGATCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - tttcatt
- - - - - - - - - - - - - - -cacataa
- - - - - - - - - - - - - - - - - - -catggca