1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtgaaacatatgcatattttgtgaactattgcagtaacatacatcattgtgtaacataaatatgccatcttttatatggataattgttggttcttacaattgattaaccgatttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAGTTTGACATGGGAGGCTCTGCAGCAGTTTTTGGTGCAGCAAAAGCTTTG
species | Oryza sativa |
transcript | LOC_Os02g55140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAG TGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAEST: gi|29673815|gb|CB670090.1|CB670090
genomic: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAGgtttgtgaaa ... ttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
EST: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAG TGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAEST: gi|33796806|gb|CF324270.1|CF324270
genomic: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAGgtttgtgaaa ... ttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
EST: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAG TGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAEST: gi|87012043|gb|CI291498.1|CI291498
genomic: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAGgtttgtgaaa ... ttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
EST: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAG TGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAEST: gi|29623639|gb|CB628650.1|CB628650
genomic: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAGgtttgtgaaa ... ttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
EST: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAG TGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAEST: gi|29672989|gb|CB669264.1|CB669264
genomic: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAGgtttgtgaaa ... ttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
EST: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAG TGGTGGCTACAACATTAAGACTGGATCAGGCTGCAGTATTGAGCTGATGAAEST: gi|29640124|gb|CB645133.1|CB645133
genomic: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAGgtttgtgaaa ... ttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
EST: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAG TGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAEST: gi|38479008|gb|CF963141.1|CF963141
genomic: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAGgtttgtgaaa ... ttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
EST: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAG TGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
genomic: AATGCCAAGAGAAAGCTGGCCATTGTTGGGAAGGGTCTAACTTTTGACAGgtttgtgaaa ... ttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAA
tcttttatatggataattgttggttcttacaattgattaaccgatttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAGTTTGACATGGGAGGCTCTGCAGCAGTTTTTGGTGCAGCAAAAGCTTTG
gattaac putative branch site (score: 86)
tttttttgc putative PPT
ttacaattgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgaaacatatgcatattttgtgaactattgcagtaacatacatcattgtgtaacataaatatgccatcttttatatggataattgttggttcttacaattgattaaccgatttttttgcagTGGTGGCTACAACATTAAGACTGGACCAGGCTGCAGTATTGAGCTGATGAAGTTTGACATGGGAGGCTCTGCAGCAGTTTTTGGTGCAGCAAAAGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG