Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggatcctgtgacccttaaatttgtggtgtaattaacgccagatgtttggtttttaacgaattattgttttatcatgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTAGCAACTGCTGCTGAGCTCAAG

Basic information

species Oryza sativa
transcript LOC_Os02g50620.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g50620.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G140150_T01 (Zea mays), 3'ss of exon 4
gtgaggatcctgtgacccttaaatttgtggtgtaattaacgccagatgtttggtttttaacgaattattgttttatcatgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTAGCAACTGCTGCTGAGCTCAAG
||  |  |  | | | | || | ||||   | ||| | | |  | | ||   |||    || | | ||| | |||  ||  || ||||| || || ||||||||||||||||| |||||| |||||||||| ||| | |||||||||||||||||||||
gtatgattgttttaatctttcagtttggaatttaaatcatgatataagt---gtt----acaattaattctgttacaatatcatcagGAACGGGACCCAATTGAAAGGGTTAGAAAGTTGCTTTTGGCTCACGACTTGGCAACTGCTGCTGAGCTCAAG

upper sequence: LOC_Os02g50620.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G361693_T01 (Zea mays), 3'ss of exon 4
gtgaggatcctgtgacccttaaatttgtggtgtaattaacgccagatgtttggtttttaacgaattattgttttatcatgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTAGCAACTGCTGCTGAGCTCAAG
|| ||| |  | ||| | || | | ||   | |||   | || |   ||   ||||    | | | ||||| |||  ||  || ||||| || |||||||||||||||||||| |||||| ||||| |||||||||| |||| ||||||||||||||||
gtaaggttgttttgatctttcagtatggaatttaaagcatgctatgcgt---gttt----caattaattgtgttacaatatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86485468|gb|CI128101.1|CI128101
EST:     CAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88958540|gb|CI096056.1|CI096056
EST:     CAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86478591|gb|CI121224.1|CI121224
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86526580|gb|CI166786.1|CI166786
EST:     CAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86435849|gb|CI107082.1|CI107082
EST:     ACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|27577814|gb|CB000509.1|CB000509
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86477775|gb|CI120408.1|CI120408
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|87026831|gb|CI259484.1|CI259484
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|29678001|gb|CB674276.1|CB674276
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88218288|gb|CI218137.1|CI218137
EST:     GAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: GAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88830554|gb|CI077998.1|CI077998
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89164169|gb|CI101257.1|CI101257
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTTAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89174769|gb|CI110967.1|CI110967
EST:     CCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|325494624|gb|JG459148.1|JG459148
EST:     TCCCGGAAGCACTTACCGTACCAGGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCA-TTGAA
genomic: TCCCGGAAGCACTTACCGTACCAGGG-ATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAA
EST: gi|88844975|gb|CI022329.1|CI022329
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAGGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86254819|gb|CI061130.1|CI061130
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88989070|gb|CI042183.1|CI042183
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88974603|gb|CI022144.1|CI022144
EST:     ACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86435053|gb|CI106286.1|CI106286
EST:     AGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: AGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86490349|gb|CI132982.1|CI132982
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|87024021|gb|CI252768.1|CI252768
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86437360|gb|CI119082.1|CI119082
EST:     CGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86490691|gb|CI133324.1|CI133324
EST:     GGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: GGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86480007|gb|CI122640.1|CI122640
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGCTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89179880|gb|CI044159.1|CI044159
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88361180|gb|CI646204.1|CI646204
EST:     ATCCCGGAAG--CTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|58588659|gb|CF986967.1|CF986967
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|87018512|gb|CI252266.1|CI252266
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|87024655|gb|CI259370.1|CI259370
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88976948|gb|CI257644.1|CI257644
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89194117|gb|CI116554.1|CI116554
EST:     GGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: GGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|29615723|gb|CB620735.1|CB620735
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89188337|gb|CI115586.1|CI115586
EST:     ATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|29686016|gb|CB682291.1|CB682291
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89192652|gb|CI049950.1|CI049950
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|15855437|gb|BI808249.1|BI808249
EST:     GATGAGATCTCAGGTGTAAGACACG                         GAGCGTGATCCACATTGAAAGGGTTAGGAA-TTGATTTTGGCTCATGACC
genomic: GATGAGATCTCAGGTGTAAGACA-Ggtgaggatcc ... atgccaacagGAGCGTGATCCA-ATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACC
EST: gi|29682671|gb|CB678946.1|CB678946
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86536206|gb|CI176412.1|CI176412
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89181695|gb|CI113201.1|CI113201
EST:     GAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: GAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|87024605|gb|CI259320.1|CI259320
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88907269|gb|CI090063.1|CI090063
EST:     ATCCCGGAAGCACTNACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|29637300|gb|CB642309.1|CB642309
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|87034225|gb|CI188849.1|CI188849
EST:     CTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88974834|gb|CI023122.1|CI023122
EST:     CAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|18386551|gb|BM419749.1|BM419749
EST:     TACCAGGGATTGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: TACCAGGGA-TGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86487927|gb|CI130560.1|CI130560
EST:     CAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88238315|gb|CI238164.1|CI238164
EST:     AGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCAA
genomic: AGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|33800928|gb|CF326337.1|CF326337
EST:     TCCCGGAAGCACTTACCGTACCAGGGGATGAGATCTCAGGTGTAAGACAG                         GAGGCGTGATCCAATTGAAAG
genomic: TCCCGGAAGCACTTACCGTACCAGGG-ATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAG-CGTGATCCAATTGAAAG
EST: gi|88957005|gb|CI095055.1|CI095055
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89163553|gb|CI100443.1|CI100443
EST:     GATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: GATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86412993|gb|CI067398.1|CI067398
EST:     TACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: TACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|86482809|gb|CI125442.1|CI125442
EST:     CAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|29639554|gb|CB644563.1|CB644563
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|66915210|gb|CX102058.1|CX102058
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88828606|gb|CI073476.1|CI073476
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGTGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|89169804|gb|CI110163.1|CI110163
EST:     GGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: GGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|87026901|gb|CI259554.1|CI259554
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88243131|gb|CI244253.1|CI244253
EST:     ATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|29689207|gb|CB685482.1|CB685482
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|396941607|gb|HO188264.1|HO188264
EST:     ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: ATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88907809|gb|CI091207.1|CI091207
EST:     TCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: TCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
EST: gi|88991066|gb|CI108453.1|CI108453
EST:     CAGGGATGAGATCTCAGGTGTAAGACAG                         GAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA
genomic: CAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 207

GTTCTTGAAATGGATACCTACAGGTACCATGGCCATTCTATGTCAGATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcc ... atgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTAGCAACTGCTGCTGAGCTCAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattaacgccagatgtttggtttttaacgaattattgttttatcatgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTAGCAACTGCTGCTGAGCTCAAG
                      ttttaac  putative branch site (score: 207)
                     tttttaacgaattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggatcctgtgacccttaaatttgtggtgtaattaacgccagatgtttggtttttaacgaattattgttttatcatgccaacagGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTAGCAACTGCTGCTGAGCTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA