1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatagatttcgccttttgtttttcaagtaacattatgaattgatggttaatccaaatgtttgatcatgagctaacagtaacctatttgttatatatacagCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCT
species | Oryza sativa |
transcript | LOC_Os02g48840.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGACCGGCGACCACAGGTGCAACTGACAGATG CTTCACAGCATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGEST: gi|87025760|gb|CI282337.1|CI282337
genomic: TGAAAGACCGGCGACCACAGGTGCAACTGACAGATGgtatgatccc ... atatatacagCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATG
EST: GCGACCACAGGTGCAACTGACAGATG CTTCACAAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATEST: gi|86505107|gb|CI147740.1|CI147740
genomic: GCGACCACAGGTGCAACTGACAGATGgtatgatccc ... atatatacagCTTCAC-AGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAAT
EST: AGGTGCAACTGACAGATG CTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGEST: gi|87031216|gb|CI259796.1|CI259796
genomic: AGGTGCAACTGACAGATGgtatgatccc ... atatatacagCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATG
EST: GTCTTACCAATGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATG CTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGGACCCAATEST: gi|88223714|gb|CI223563.1|CI223563
genomic: GTCTTACCAATGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGgtatgatccc ... atatatacagCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTC-GGACCCAAT
EST: CAGGTGCAACTGACAGATG CTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATG
genomic: CAGGTGCAACTGACAGATGgtatgatccc ... atatatacagCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATG
gttaatccaaatgtttgatcatgagctaacagtaacctatttgttatatatacagCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCT
cagtaac putative branch site (score: 21)
tatttgttatatatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagatttcgccttttgtttttcaagtaacattatgaattgatggttaatccaaatgtttgatcatgagctaacagtaacctatttgttatatatacagCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCT
- - - - - - cttttgt
- - - - - - - - - - - - - - - - - - - -ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - aatccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgagc