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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaagtgtgaaaaatattacgtttaattttccttgcgcaacataagggttttacaaagcatcgactgattctgatgagagatctctttgtagGGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTTTCATCCGCAGCAAATACTGCTAGCCAACCATTTAGCCAGTTCAGCCCGT

Basic information

species Oryza sativa
transcript LOC_Os02g48340.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33676574|gb|CF304813.1|CF304813
EST:     GGGACAGAATACATCTATCCACAG                         GGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTT
genomic: GGGACAGAATACATCTATCCACAGgttgaagtgt ... ctctttgtagGGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTT
EST: gi|33793822|gb|CF322799.1|CF322799
EST:     CTACACTACATATGGGACAGAATACATCTATCCACAG                         GGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTT
genomic: CTACACTACATATGGGACAGAATACATCTATCCACAGgttgaagtgt ... ctctttgtagGGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTT
EST: gi|38474304|gb|CF958436.1|CF958436
EST:     CTACACTACATATGGGACAGAATACATCTATCCACAG                         GGTACATTAAACCCATACGTTGGTCAGCAATATGTTCCAATTTATGGAGTT
genomic: CTACACTACATATGGGACAGAATACATCTATCCACAGgttgaagtgt ... ctctttgtagGGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTT
EST: gi|29677295|gb|CB673570.1|CB673570
EST:     CTACACTACACTATGGGACAGAATACATCTATCCACAG                         GGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTT
genomic: CTACACTACA-TATGGGACAGAATACATCTATCCACAGgttgaagtgt ... ctctttgtagGGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacataagggttttacaaagcatcgactgattctgatgagagatctctttgtagGGTACATTAAACCCATATGTTGGTCAGCAATATGTTCCAATTTATGGAGTTTCATCCGCAGCAAATACTGCTAGCCAACCATTTAGCCAGTTCAGCCCGT
                               ttctgat  putative branch site (score: 3)
 tctctttgt  putative PPT
 ttttacaaa  TA-rich tract