Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttgccctggaaaatgccacttaattggtgtggttgttacctctgctcgttcaccgtgccttacttttctattttatctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTCGGGAGCAAAAGCGGCTTCAAGTTTCTCGTATCAAGTATTAGCACTAAGT

Basic information

species Oryza sativa
transcript LOC_Os02g47870.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47870.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G361074_T02 (Zea mays), 3'ss of exon 2
gttggttgccctggaaaat--gccacttaattggtgtggttgtt-------acctctgctcgttcaccgtgccttacttttctattt------tatctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTCGGGAGCAAAAGCGGCTTCAA-GTTTCTCGT-ATCAAGTATTAGCACTAAGT
|| ||| ||||||| |  |  ||| ||| ||   |||| |||||       ||   | | ||| |||   |||| || ||   ||||      |  |  |||||||||||| ||||||||||||||||||||||||||||||| |       |||||       ||  ||||||  |||||||||  |  || | |||   | | |
gtcggtagccctggcatttctgcctcttgatcaatgtgattgttttttgttactcattcccgtccacaccgcctcaccttctaatttgtaatttgacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGT--GGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT

upper sequence: LOC_Os02g47870.1 (Oryza sativa), 3'ss of exon 4
lower sequence: EFJ06425 (Selaginella moellendorffii), 3'ss of exon 3
gttggttgccctggaaaatgccacttaattggtgtggttgttacctctgctcgttcaccgtgccttacttttcta-ttttatctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTCGGGAGCAAAAGCGGCTTCAAGTTTCTCGTATCAAGTATTAGCACTAAGT
                         |||  |  |  |     | || |    |  |   |   ||||||  || | |||| |   | |||| ||||||||||||||||||||||| || |||| ||||                                                              
------------------------gtaa--gacgaagaaacaaacttt--cagagctttgcctcttactcgtccagtttttttcctccagATAACAGCGAGTGGGAGTTCCAGAAATACGGTCGCTAG--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86602211|gb|CI262680.1|CI262680
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|86824548|gb|CI263034.1|CI263034
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|87026736|gb|CI254842.1|CI254842
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88310527|gb|CI659317.1|CI659317
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGT
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGT
EST: gi|58586941|gb|CF985249.1|CF985249
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88537330|gb|CI465161.1|CI465161
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88355555|gb|CI679275.1|CI679275
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|86897276|gb|CI294334.1|CI294334
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGG
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGG
EST: gi|88577100|gb|CI673655.1|CI673655
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGA
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGA
EST: gi|55434732|gb|CV730490.1|CV730490
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|86531631|gb|CI171837.1|CI171837
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88572104|gb|CI663675.1|CI663675
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGT
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGT
EST: gi|88398748|gb|CI598713.1|CI598713
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGA
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGA
EST: gi|88329496|gb|CI648558.1|CI648558
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCAC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCAC
EST: gi|58585864|gb|CF984172.1|CF984172
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCACGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88477901|gb|CI415172.1|CI415172
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|86534249|gb|CI174455.1|CI174455
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGGCAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|55434734|gb|CV730491.1|CV730491
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|86431314|gb|CI084925.1|CI084925
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|3759878|gb|C97136.1|C97136
EST:     TTCCACTGCATCCA-CCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: TTCCACTGCAT-CAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88503232|gb|CI430738.1|CI430738
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTTTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACCATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|55441579|gb|CV734113.1|CV734113
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88344293|gb|CI655687.1|CI655687
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88346056|gb|CI633929.1|CI633929
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAN                         ACAACAGCGAGTGGGAGTTCCANAAGTATGG
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGG
EST: gi|88976245|gb|CI024462.1|CI024462
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88305115|gb|CI652052.1|CI652052
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAG
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAG
EST: gi|88252851|gb|CI350276.1|CI350276
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88556594|gb|CI486932.1|CI486932
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88848550|gb|CI087072.1|CI087072
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88523676|gb|CI451524.1|CI451524
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88238846|gb|CI236697.1|CI236697
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88483270|gb|CI420541.1|CI420541
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88410530|gb|CI686468.1|CI686468
EST:     NTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAA                         ACAACAGCGAGTGGGAGTTCCAGAAGTA
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTA
EST: gi|88484351|gb|CI421622.1|CI421622
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|38478406|gb|CF962539.1|CF962539
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88556822|gb|CI487179.1|CI487179
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88540782|gb|CI468852.1|CI468852
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88556939|gb|CI487304.1|CI487304
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88466397|gb|CI529806.1|CI529806
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88488493|gb|CI425764.1|CI425764
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88526824|gb|CI454913.1|CI454913
EST:     CTTCCACTGCATCACCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88538461|gb|CI467494.1|CI467494
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88451823|gb|CI694594.1|CI694594
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATT
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATT
EST: gi|25800584|gb|CA756545.1|CA756545
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|15851044|gb|BI799320.1|BI799320
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88503235|gb|CI430741.1|CI430741
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|55437350|gb|CV731894.1|CV731894
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88538806|gb|CI467867.1|CI467867
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|33808930|gb|CF330351.1|CF330351
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCTAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88360682|gb|CI647692.1|CI647692
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAG
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAG
EST: gi|88294972|gb|CI522926.1|CI522926
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88762328|gb|CI771884.1|CI771884
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAA
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAA
EST: gi|88571713|gb|CI663086.1|CI663086
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTC
EST: gi|88210386|gb|CI210235.1|CI210235
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88289393|gb|CI555755.1|CI555755
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88310490|gb|CI659280.1|CI659280
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTC
EST: gi|88338016|gb|CI676999.1|CI676999
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88463910|gb|CI527237.1|CI527237
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|86846893|gb|CI283052.1|CI283052
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|86820890|gb|CI357631.1|CI357631
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|33808928|gb|CF330350.1|CF330350
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCTAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|58607531|gb|CK035564.1|CK035564
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88344290|gb|CI655684.1|CI655684
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|218496814|gb|FG947952.1|FG947952
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|55441581|gb|CV734114.1|CV734114
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTTTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTTTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88543776|gb|CI473812.1|CI473812
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|55433516|gb|CV729865.1|CV729865
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88530088|gb|CI457424.1|CI457424
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCCCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88485324|gb|CI422595.1|CI422595
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88282992|gb|CI404240.1|CI404240
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|86534541|gb|CI174747.1|CI174747
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88511991|gb|CI439497.1|CI439497
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88278569|gb|CI399569.1|CI399569
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACCACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|55438491|gb|CV732542.1|CV732542
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTCTGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|55438489|gb|CV732541.1|CV732541
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|87019232|gb|CI279742.1|CI279742
EST:     CTTCCACTGCATTAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTTTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTTTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|15008499|gb|AU222887.1|AU222887
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88480620|gb|CI417891.1|CI417891
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88438729|gb|CI546211.1|CI546211
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88313926|gb|CI599928.1|CI599928
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88507265|gb|CI434771.1|CI434771
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|87025864|gb|CI282441.1|CI282441
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACTACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACGATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88848429|gb|CI086951.1|CI086951
EST:     TCCACTGCATCAGCCGTTGGCTCAAGAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: TCCACTGCATCAGCCGTTGGCTC-A-AGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|10423655|gb|AU108186.1|AU108186
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88988503|gb|CI037740.1|CI037740
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|56158480|gb|AU088576.2|AU088576
EST:     TTCCACTTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTT
genomic: TTCCACT-GCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTT-
EST: gi|88256243|gb|CI358631.1|CI358631
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88278610|gb|CI399610.1|CI399610
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|568841|gb|D39690.1|D39690
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         GCAACAGCGAGTTGGAGTTCCAGAAGTATGGT
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGT
EST: gi|88279141|gb|CI400141.1|CI400141
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88512714|gb|CI440220.1|CI440220
EST:     TTCCACTGCATCAGGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: TTCCACTGCATCA-GCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|58687844|gb|CK076531.1|CK076531
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
EST: gi|88507295|gb|CI434801.1|CI434801
EST:     CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAG                         ACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC
genomic: CTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 73 (downstream exon)
Score: 64

GAGTTTGCAACCATGCATTCCACTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgcc ... atctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTCGGGAGCAAAAGCGGCTTCAAGTTTCTCGTATCAAGTATTAGCACTAAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgttacctctgctcgttcaccgtgccttacttttctattttatctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTCGGGAGCAAAAGCGGCTTCAAGTTTCTCGTATCAAGTATTAGCACTAAGT
                           gccttac  putative branch site (score: 64)
                            ccttacttttctattt  CT-rich tract
                              ttacttttctatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttggttgccctggaaaatgccacttaattggtgtggttgttacctctgctcgttcaccgtgccttacttttctattttatctatgcagACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACAATTCTCTTTCGGGAGCAAAAGCGGCTTCAAGTTTCTCGTATCAAGTATTAGCACTAAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA