1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgactaccttatcgtttcctgccattctctcgtcagagaccaagctttcttcgcaacgtcgttgatttcttaaccagggccctgtcattttcgtaccagATGGAGCCGTTCTTTTGCTTGGCTATTTTTGTGAATTATGGAGCGGGCAAGTGGGTCATCCTGAAGGACGACGAGAGTGAGACGGCAACATCGATGGACG
species | Oryza sativa |
transcript | LOC_Os02g47320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
ctttcttcgcaacgtcgttgatttcttaaccagggccctgtcattttcgtaccagATGGAGCCGTTCTTTTGCTTGGCTATTTTTGTGAATTATGGAGCGGGCAAGTGGGTCATCCTGAAGGACGACGAGAGTGAGACGGCAACATCGATGGACG
tcttaac putative branch site (score: 4)
tcattttc putative PPT
atttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgactaccttatcgtttcctgccattctctcgtcagagaccaagctttcttcgcaacgtcgttgatttcttaaccagggccctgtcattttcgtaccagATGGAGCCGTTCTTTTGCTTGGCTATTTTTGTGAATTATGGAGCGGGCAAGTGGGTCATCCTGAAGGACGACGAGAGTGAGACGGCAACATCGATGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - -tcctgcc
- - - - - - - - - - - - - - - - - - -agaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggccctg