1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcatgctgccaaaatgatggtacactcgtgctatcaataaataataacacgtatcaatcttgtgcagggaggtcataacttcatttgttgttgacttcagGGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAGTACACCCAGATGGTCCAGGTGCAAGGAATCGACCACTCTCTTGGTATCT
species | Oryza sativa |
transcript | LOC_Os02g46700.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACTTGTTTGTGTACTATGTCAATGGGGGCCGTTCGCCTTGCTCACCACT GGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAGEST: gi|88200559|gb|CI200409.1|CI200409
genomic: TACTTGTTTGTGTACTATGTCAATGGGGGCCGTTCGCCTTGCTCACCACTgtaagtattt ... ttgacttcagGGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAG
EST: TACTTGTTTGTGTACTATGTCAATGGGGGCCGTTCGCCTTGCTCACCACT GGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAGEST: gi|86502195|gb|CI144828.1|CI144828
genomic: TACTTGTTTGTGTACTATGTCAATGGGGGCCGTTCGCCTTGCTCACCACTgtaagtattt ... ttgacttcagGGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAG
EST: TACTTGTTTGTGTACTATGTCAATGGGGCCCGTTCGCCTTGCTCACCACT GGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAG
genomic: TACTTGTTTGTGTACTATGTCAATGGGGGCCGTTCGCCTTGCTCACCACTgtaagtattt ... ttgacttcagGGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAG
aacacgtatcaatcttgtgcagggaggtcataacttcatttgttgttgacttcagGGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAGTACACCCAGATGGTCCAGGTGCAAGGAATCGACCACTCTCTTGGTATCT
tatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgctgccaaaatgatggtacactcgtgctatcaataaataataacacgtatcaatcttgtgcagggaggtcataacttcatttgttgttgacttcagGGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTGGAACAAAGAGGAGAGAAGTACACCCAGATGGTCCAGGTGCAAGGAATCGACCACTCTCTTGGTATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tgctgcc
- - - - - - aatgatg
- - - - - - - - - - - - ctcgtgc
- - - - - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcagg