1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcagattataaaatcagtcaggcatctatgagctcatttgctgcttatgttagtatcttaccacgccgagctaatcaatattttcacttctaaatttcagTTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCTCCGTGATGTGGATGACACCAACAAGCTGAAAGTGTCCATATGGCTCCGG
species | Oryza sativa |
transcript | LOC_Os02g44770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGCCACCCCAGTGGAGAAATTAGCCCTTATGAAGGAAAGATTATTACG TTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCTEST: gi|87014091|gb|CI273281.1|CI273281
genomic: GTTGCCACCCCAGTGGAGAAATTAGCCCTTATGAAGGAAAGATTATTACGgtatgtatta ... taaatttcagTTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCT
EST: GTTGCCACCCCAGTGGAGAAATTAGCCCTTATGAAGGAAAGATTATTACG TTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCTEST: gi|87023245|gb|CI272073.1|CI272073
genomic: GTTGCCACCCCAGTGGAGAAATTAGCCCTTATGAAGGAAAGATTATTACGgtatgtatta ... taaatttcagTTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCT
EST: CCAGTGGAGAAATTAGCCCTTATGAAGGAAAGATTATTACG TTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCT
genomic: CCAGTGGAGAAATTAGCCCTTATGAAGGAAAGATTATTACGgtatgtatta ... taaatttcagTTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCT
tatgttagtatcttaccacgccgagctaatcaatattttcacttctaaatttcagTTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCTCCGTGATGTGGATGACACCAACAAGCTGAAAGTGTCCATATGGCTCCGG
ttctaaa putative branch site (score: 7)
ttttcacttct CT-rich tract
aatattttcacttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagattataaaatcagtcaggcatctatgagctcatttgctgcttatgttagtatcttaccacgccgagctaatcaatattttcacttctaaatttcagTTACATCGACAACAAGAAGGACCATTGGTATCCTGGTGCAATGATTGTCCTCCGTGATGTGGATGACACCAACAAGCTGAAAGTGTCCATATGGCTCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - -aaaatcag
- - - - - - - - - caggcat
- - - - - - - - - - - - - - - - - - - tgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacgcc