1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcttcaaaccttcttggataatttatcacctttcagttgcagcttaagcagccttattaactcaaaattttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGACTGGACTATGAGTCAAGCTTGTACTGATTCATATACCAAAACTCTGAAG
species | Oryza sativa |
transcript | LOC_Os02g40890.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAG GGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCAEST: gi|396941616|gb|HO188273.1|HO188273
genomic: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAGgtgcttcaaa ... ttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCA
EST: ACTGCAGAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAG GGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGAEST: gi|396941507|gb|HO188716.1|HO188716
genomic: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAGgtgcttcaaa ... ttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGA
EST: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAG GGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGAEST: gi|33807484|gb|CF329619.1|CF329619
genomic: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAGgtgcttcaaa ... ttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGA
EST: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAG GGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGAEST: gi|9865530|gb|AU101280.1|AU101280
genomic: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAGgtgcttcaaa ... ttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGA
EST: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAG GGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGAEST: gi|88236949|gb|CI236798.1|CI236798
genomic: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAGgtgcttcaaa ... ttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGA
EST: CTGCACAAATGGACTTCTGTGGCTCACGAG GGCTATGGACTTCCTTGTTGAATTATTCCGTAGCCTGCTTGAGCATCAAGAEST: gi|66914261|gb|CX101109.1|CX101109
genomic: CTGCACAAATGGACTTCTGTGGCTCACGAGgtgcttcaaa ... ttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGA
EST: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAG GGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGA
genomic: ACTGCAAAAGGTTCGTCAAGCTGCACAAATGGACTTCTGTGGCTCACGAGgtgcttcaaa ... ttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGA
atcacctttcagttgcagcttaagcagccttattaactcaaaattttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGACTGGACTATGAGTCAAGCTTGTACTGATTCATATACCAAAACTCTGAAG
tattaac putative branch site (score: 86)
ttttactttc putative PPT
ttattaactcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttcaaaccttcttggataatttatcacctttcagttgcagcttaagcagccttattaactcaaaattttactttcagGGCTATGGACTTCCTTGTTGAATTATTCCGTAACCTGCTTGAGCATCAAGACTGGACTATGAGTCAAGCTTGTACTGATTCATATACCAAAACTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG