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gtacatatatatgtttttaactttcttgacatcaacaatatgaatctacattcctacccagacaaaaagataccatctaattgatttggtttttatttccagGAAACTTCTGCTGCATCTTTTGAACTTGCAGAGAAGGTGATAGGTGCATGCTCTGAAAAACTGAAACCGGTCTTTCTGCAGTTACTTAAAGGCACTTCCT
species | Oryza sativa |
transcript | LOC_Os02g39920.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATA-CCATTGCAGAATGTCTGCTCAAGCATGCTAAGTCCGAGCGGAAG GAAACTTCTGCTGCATCTTTTGAACTTGCAGAGAAGGTGATAGGTGCATGCEST: gi|29630305|gb|CB635314.1|CB635314
genomic: AGATACCCATTGCAGAATGTCTGCTCAAGCATGCTAAGTCCGAACTGAAGgtacatatat ... ttatttccagGAAACTTCTGCTGCATCTTTTGAACTTGCAGAGAAGGTGATAGGTGCATGC
EST: AGATACCCATTGCAGAATGTCTGCTCAAGCATGCTAAGTCCGAACTGAAG GAAACTTCTGCTGCATCTTTTGAACTTGCAGAGAAGGTGATAGGTGCATGC
genomic: AGATACCCATTGCAGAATGTCTGCTCAAGCATGCTAAGTCCGAACTGAAGgtacatatat ... ttatttccagGAAACTTCTGCTGCATCTTTTGAACTTGCAGAGAAGGTGATAGGTGCATGC
acattcctacccagacaaaaagataccatctaattgatttggtttttatttccagGAAACTTCTGCTGCATCTTTTGAACTTGCAGAGAAGGTGATAGGTGCATGCTCTGAAAAACTGAAACCGGTCTTTCTGCAGTTACTTAAAGGCACTTCCT
tttttatttcc CT-rich tract
taattgatttggtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatatatatgtttttaactttcttgacatcaacaatatgaatctacattcctacccagacaaaaagataccatctaattgatttggtttttatttccagGAAACTTCTGCTGCATCTTTTGAACTTGCAGAGAAGGTGATAGGTGCATGCTCTGAAAAACTGAAACCGGTCTTTCTGCAGTTACTTAAAGGCACTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG