1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttgttttaggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCTCGTGAGCGA
species | Oryza sativa |
transcript | LOC_Os02g39720.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|29660884|gb|CB657159.1|CB657159
genomic: AGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|33655054|gb|CF277668.1|CF277668
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88206556|gb|CI206405.1|CI206405
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: GAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88241382|gb|CI241231.1|CI241231
genomic: GAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|33686629|gb|CF314868.1|CF314868
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|86435370|gb|CI106603.1|CI106603
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|32948206|gb|BP184778.1|BP184778
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|32948206|gb|BP184778.1|BP184778
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|32948206|gb|BP184778.1|BP184778
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|32948206|gb|BP184778.1|BP184778
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|32948206|gb|BP184778.1|BP184778
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|32948206|gb|BP184778.1|BP184778
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|32948206|gb|BP184778.1|BP184778
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|15850480|gb|BI798756.1|BI798756
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCA-CC-CAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|89168547|gb|CI038901.1|CI038901
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|218482191|gb|FG968621.1|FG968621
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|87034991|gb|CI189615.1|CI189615
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|58686398|gb|CK075085.1|CK075085
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|88244095|gb|CI243217.1|CI243217
genomic: CCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|33820136|gb|CF335883.1|CF335883
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: CAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|33692937|gb|CF321176.1|CF321176
genomic: CAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|88217821|gb|CI217670.1|CI217670
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: CAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCCCCACCEST: gi|86510612|gb|CI153245.1|CI153245
genomic: CAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88206414|gb|CI206263.1|CI206263
genomic: AGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|29658266|gb|CB654541.1|CB654541
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|86510451|gb|CI153084.1|CI153084
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: GCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|87018220|gb|CI265512.1|CI265512
genomic: GCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|33655693|gb|CF278307.1|CF278307
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGCCCAAGATACCGGAGGAGCCCAAGCTATGG-AGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|109711528|gb|CI013133.1|CI013133
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|218504630|gb|FG968738.1|FG968738
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|86531202|gb|CI171408.1|CI171408
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|88220436|gb|CI219996.1|CI219996
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|58663506|gb|CK052192.1|CK052192
genomic: TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|86903241|gb|CI313604.1|CI313604
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTAT-GTAGAAG CCCAC-GGATCGTTCTCCAAAGAGGCGGCAGCTACAGCAGGTCTCCACCACEST: gi|29643918|gb|CB648925.1|CB648925
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGC-GCAGCTACAGCAGGTCGCCACCAC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|10930819|gb|AU161093.1|AU161093
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|33656410|gb|CF279024.1|CF279024
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|4714908|gb|AU056025.1|AU056025
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATNCCGGAGGAGCCCAAGCTATGGTAGAAN CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|87033033|gb|CI187657.1|CI187657
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: CGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGCAGAAGGAGTTACAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACEST: gi|38475200|gb|CF959333.1|CF959333
genomic: CGCAGCCCAAGATACCGGAGGAGCCCAAGCTAT----G--GTAG--A-AGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCAC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|58661010|gb|CK049690.1|CK049690
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88212033|gb|CI211673.1|CI211673
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88836947|gb|CI008383.1|CI008383
genomic: TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88210718|gb|CI210567.1|CI210567
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88852217|gb|CI373985.1|CI373985
genomic: AGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: GTCGCAGCCGCAGCCCAAGATAGCCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|29660883|gb|CB657158.1|CB657158
genomic: GTCGCAGCCGCAGCCCAAGATA-CCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|29660883|gb|CB657158.1|CB657158
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|29660883|gb|CB657158.1|CB657158
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|29660883|gb|CB657158.1|CB657158
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|29660883|gb|CB657158.1|CB657158
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|29660883|gb|CB657158.1|CB657158
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|29660883|gb|CB657158.1|CB657158
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG GEST: gi|86524080|gb|CI164286.1|CI164286
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|33659836|gb|CF282449.1|CF282449
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88205458|gb|CI205307.1|CI205307
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|38482929|gb|CF966731.1|CF966731
genomic: CCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|33655436|gb|CF278050.1|CF278050
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|325493520|gb|JG458044.1|JG458044
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGEST: gi|86823218|gb|CI254080.1|CI254080
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCG
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|33655845|gb|CF278459.1|CF278459
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|58684860|gb|CK073547.1|CK073547
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|88265222|gb|CI368996.1|CI368996
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: CCGGAGGAGCCCAAGCTAT-GTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|86599832|gb|CI255994.1|CI255994
genomic: CCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|29687025|gb|CB683300.1|CB683300
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|87031507|gb|CI263880.1|CI263880
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|87024794|gb|CI261303.1|CI261303
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|88832565|gb|CI008161.1|CI008161
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|86497432|gb|CI140065.1|CI140065
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|58691645|gb|CK080332.1|CK080332
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|86495002|gb|CI137635.1|CI137635
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|86906238|gb|CI320169.1|CI320169
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|87033138|gb|CI187762.1|CI187762
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|33657441|gb|CF280055.1|CF280055
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: GCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|86530292|gb|CI170498.1|CI170498
genomic: GCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88201589|gb|CI201944.1|CI201944
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|29658267|gb|CB654542.1|CB654542
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|88206373|gb|CI206222.1|CI206222
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: ATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGTTACAGCAGGTCGCCACCACCEST: gi|33806964|gb|CF329363.1|CF329363
genomic: ATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|86528595|gb|CI168801.1|CI168801
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAGEST: gi|33664155|gb|CF295122.1|CF295122
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGTTACAGCAGGTCGCCACCACCEST: gi|86596340|gb|CI268640.1|CI268640
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCEST: gi|87020038|gb|CI277770.1|CI277770
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
tgataaccgcaagtttgtttgtttttaaaacctttctttgttttaggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCTCGTGAGCGA
tgataac putative branch site (score: 2)
tttgtttgtttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttgttttaggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCTCGTGAGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC