Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatgctactgttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCT

Basic information

species Oryza sativa
transcript LOC_Os02g39720.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g39720.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G107896_T01 (Zea mays), 3'ss of exon 4
tcatgctact-gttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttg---ttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCAC------CAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCT
    |  ||| | |    | | |    ||   |   | | |  | |  | || |   ||         |  |||  |  | |||||   | || |   ||| ||||| ||||||||||| ||||||||||| | |||||| || |||||||||||||| ||||      || | | | |  |||   |||||   ||||| |        
---agtgactagataaaatatagatcaatgtctttgcctcactagcagtctttt-caatggattatgttgcgttcatcctgaaaacaaatgttggggttttcagGAGCTACAGCCCACGAGATCGTTCTCCTAGGAGGCGAAGTTACAGCAGGTCGCCGCCACTGCCACCACCGCCTCCTAGAAATAACAGCATGTCACCACGG------

upper sequence: LOC_Os02g39720.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G027105_T04 (Zea mays), 3'ss of exon 4
tcatgctactg-ttgttgtgttgccacatacatgcccttaagcaactattttctgtg-ataaccgcaagtttgtttgtttttaaaacctttctttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCT---------
  |   ||| | |   ||| ||    | ||  |       |||| |  |||||  ||  | |    | |||  |   |    | ||   |||  | |||  |||| |||||||| || ||||||||||| | |||||| || ||||||||||||||||    | ||| |||||| ||   |||| | ||||| || |  ||          
--aaaatacagatcaatgtcttcttgcctaact-------agcagcc-ttttcaatgcgttattttatgttcatcc-tgaaaacaaatgttcggtttttccggagctacagCCCGCGAGATCGTTCTCCTAGGAGGCGAAGTTACAGCAGGTCGCCACTGGGATCTCCTGCACGGAGTCTCAGCAGGTCACCGCCGCTGCCGCCGCCTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33656410|gb|CF279024.1|CF279024
EST:     AGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|10930819|gb|AU161093.1|AU161093
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86596340|gb|CI268640.1|CI268640
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33657441|gb|CF280055.1|CF280055
EST:     GCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: GCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|218482191|gb|FG968621.1|FG968621
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|38482929|gb|CF966731.1|CF966731
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33659836|gb|CF282449.1|CF282449
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|55438762|gb|CV732679.1|CV732679
EST:     AGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86510451|gb|CI153084.1|CI153084
EST:     GCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: GCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33805790|gb|CF328774.1|CF328774
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88220436|gb|CI219996.1|CI219996
EST:     TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88205458|gb|CI205307.1|CI205307
EST:     CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88213330|gb|CI213179.1|CI213179
EST:     GGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: GGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|89182137|gb|CI012071.1|CI012071
EST:     GATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: GATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88836947|gb|CI008383.1|CI008383
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88552464|gb|CI482473.1|CI482473
EST:     CGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: CGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|218504630|gb|FG968738.1|FG968738
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|32948206|gb|BP184778.1|BP184778
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|58691645|gb|CK080332.1|CK080332
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88533092|gb|CI460628.1|CI460628
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33657002|gb|CF279616.1|CF279616
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86495002|gb|CI137635.1|CI137635
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|4715829|gb|AU056945.1|AU056945
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAN-TACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86545716|gb|CI185922.1|CI185922
EST:     ATTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33655054|gb|CF277668.1|CF277668
EST:     AGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86599832|gb|CI255994.1|CI255994
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33655436|gb|CF278050.1|CF278050
EST:     AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|87024794|gb|CI261303.1|CI261303
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|58659097|gb|CK047777.1|CK047777
EST:     CCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: CCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88241382|gb|CI241231.1|CI241231
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|29660883|gb|CB657158.1|CB657158
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|5003508|gb|AU068657.1|AU068657
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33692937|gb|CF321176.1|CF321176
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|87031507|gb|CI263880.1|CI263880
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|29658267|gb|CB654542.1|CB654542
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86543110|gb|CI183316.1|CI183316
EST:     TACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: TACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|58684860|gb|CK073547.1|CK073547
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86497432|gb|CI140065.1|CI140065
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33655845|gb|CF278459.1|CF278459
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|87020038|gb|CI277770.1|CI277770
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|87034991|gb|CI189615.1|CI189615
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33686629|gb|CF314868.1|CF314868
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|58686398|gb|CK075085.1|CK075085
EST:     CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33680282|gb|CF308521.1|CF308521
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGT
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGG-ATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGT
EST: gi|86524080|gb|CI164286.1|CI164286
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|109711528|gb|CI013133.1|CI013133
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86531202|gb|CI171408.1|CI171408
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|87033033|gb|CI187657.1|CI187657
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGCAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86896767|gb|CI317317.1|CI317317
EST:     GTCGCAGCCGCAGCCCAAGATACCGGAGGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGA-GCGCAGCTACAGCAGGTC
genomic: GTCGCAGCCGCAGCCCAAGATACCGGA-GGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|38475200|gb|CF959333.1|CF959333
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|58690375|gb|CK079062.1|CK079062
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|29643918|gb|CB648925.1|CB648925
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86906238|gb|CI320169.1|CI320169
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|4715830|gb|AU056946.1|AU056946
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|29660884|gb|CB657159.1|CB657159
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|87033138|gb|CI187762.1|CI187762
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|87029034|gb|CI351337.1|CI351337
EST:     GAGCCCAAGCTAT-GTAGAAG                         GAGTTACAGCCCAC-GGATCGTTCTCCAAAGAGGCCCAG-TACAGCAGGTC
genomic: GAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88244095|gb|CI243217.1|CI243217
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|29658266|gb|CB654541.1|CB654541
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         ------C--CC-ACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88239137|gb|CI240299.1|CI240299
EST:     CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86823218|gb|CI254080.1|CI254080
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88201589|gb|CI201944.1|CI201944
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88217611|gb|CI217460.1|CI217460
EST:     AGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86528595|gb|CI168801.1|CI168801
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|58663506|gb|CK052192.1|CK052192
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88212033|gb|CI211673.1|CI211673
EST:     TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|29687025|gb|CB683300.1|CB683300
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|86530292|gb|CI170498.1|CI170498
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|33658330|gb|CF280943.1|CF280943
EST:     AGCCCAAGATACCGGAGGAGCCCAAGCTATGGT-----                         -AG--A-AGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|88206414|gb|CI206263.1|CI206263
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
EST: gi|87018220|gb|CI265512.1|CI265512
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         GAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... tttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCT
         tgataac  putative branch site (score: 2)
                                       cctttctttgtttt  putative PPT
                      tttgtttgtttttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcatgctactgttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttgttttagGAGTTACAGCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- -tgctact
- - - - - gttgttg
- - - - - - - - -tgttgcc
- - - - - - - - - - - - - -tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt