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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccagaaaatatagcttactgtatgcactagattttttttcctcttaccgattgatcatgcctagtgtgacctttcatgacataatctaattttatggcagATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTG

Basic information

species Oryza sativa
transcript LOC_Os02g35590.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920379|gb|EG714466.1|EG714466
EST:     AGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAG                         ATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTA
genomic: AGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGgtaatgatag ... tttatggcagATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgattgatcatgcctagtgtgacctttcatgacataatctaattttatggcagATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTG
                                      atctaat  putative branch site (score: 3)
                                 acataatctaatttta  TA-rich tract