1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tggcaacactagcttttgtatgcaataactttcaggatatgcgacattgatcccattaaccagatgatgccttctctttcttctctttattttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGGCTCATCGCTCACCGTATGATGCTGTAGCAAATCTATATGCCGAACTAAT
species | Oryza sativa |
transcript | LOC_Os02g35170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATG GGCACCCAAGGCAGCTACGATGATACTAAGCCTTAGCCTAGACGACAATGGEST: gi|157651668|gb|EX451302.1|EX451302
genomic: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATGgtaattgcta ... tttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGG
EST: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATG GGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGGEST: gi|86494827|gb|CI137460.1|CI137460
genomic: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATGgtaattgcta ... tttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGG
EST: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATG GGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGGEST: gi|14981076|gb|BI305767.1|BI305767
genomic: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATGgtaattgcta ... tttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGG
EST: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATG GGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGGEST: gi|4715310|gb|AU056427.1|AU056427
genomic: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATGgtaattgcta ... tttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGG
EST: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATG GGCACCCAAGGCAGCTACGATGATACNAAGCCTTGGCCTAGACGACAATGGEST: gi|25801657|gb|CA757618.1|CA757618
genomic: AATTCATGCTTCGGAAGCTCGGCCTCATTATACCAATCAACTGAACAATGgtaattgcta ... tttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGG
EST: CTCGGCCTCATTATACCAATCAACTGAACAATG GGCACCCTAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGG
genomic: CTCGGCCTCATTATACCAATCAACTGAACAATGgtaattgcta ... tttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGG
attgatcccattaaccagatgatgccttctctttcttctctttattttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGGCTCATCGCTCACCGTATGATGCTGTAGCAAATCTATATGCCGAACTAAT
cattaac putative branch site (score: 32)
tgatgccttctctttc putative PPT
tttcttctctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcaacactagcttttgtatgcaataactttcaggatatgcgacattgatcccattaaccagatgatgccttctctttcttctctttattttttttcagGGCACCCAAGGCAGCTACGATGATACTAAGCCTTGGCCTAGACGACAATGGCTCATCGCTCACCGTATGATGCTGTAGCAAATCTATATGCCGAACTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - cactagc
- - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - -tgatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaga