Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccccttcttttctttttttgttccctttacattttggttgccaaaaagattgtagttatgaaattctgttagttatgtgcaagtttttcattgccatacatgcttaacgcagGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATG

Basic information

species Oryza sativa
transcript LOC_Os02g35160.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g35160.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G432525_T01 (Zea mays), 3'ss of exon 1
gtaagttccccttcttttctttttttgttccctttacattttggttgccaaaaagatt-gtagttatgaaattctgttagttatgtgcaagtttttcattgccatacatgcttaacgcagGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATG-----
                                         | | || ||| |  | |   ||| | |  |       |   || |||    | ||  || ||||  |||| | || |||||||||  |||||||||||| |||| |||||| || ||||||||  ||||||||||||||||   ||||   || ||||  | ||||   |||||     
----------------------------------------gtaggtgtcaatataactcaaagtgacgtga----acaatgcatatgcctactattttttaccat-tatgcattacacagGTTGGGAGCACAACTATGAGTAGTACTGAAGCTTTGAAGGCAGGACTACGTGGCAAGGCTTTAAAGATTTTACATTACTACAGGGATATGTTATGGCAAG

upper sequence: LOC_Os02g35160.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G128189_T01 (Zea mays), 3'ss of exon 4
gtaagttccccttcttttctttt--tttgttccctttacattttggttgccaaaaagattgtagttatgaaattctgttagttatgtgcaagtttttcattgccatacatgcttaacgcagGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATG
|||||||   | | ||||||| |   |  ||   |  | | |||  |  |    ||   | || | |  |  |||    || |||  |   |||||| |     || |||     || |||||||||  |||||||||||| |||| |||||| || ||||||||  ||||||||||||||||   ||||   || ||||  | ||||   |||||
gtaagtttttcatattttcttgtaactgattttgtccagagttt--taactggtaaagctcta-tcagcatgttc----agatatacg---gttttttaccattatgcatt----acacagGTTGGGAGCACAACTATGAGTAGTACTGAAGCTTTGAAGGCAGGACTACGTGGCAAGGCTTTAAAGATTTTACATTACTACAGGGATATGTTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaattctgttagttatgtgcaagtttttcattgccatacatgcttaacgcagGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATG
                                            gcttaac  putative branch site (score: 3)
                          tttttcatt  TA-rich tract