1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatagtacttctgttttgctgttacttttaagtcaagtttcaatctttatttttatcttccatatacagGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAAC
species | Oryza sativa |
transcript | LOC_Os02g35130.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAG GAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAEST: gi|33683950|gb|CF312189.1|CF312189
genomic: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGgtaatagtac ... ccatatacagGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAA
EST: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAG GAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAEST: gi|29678306|gb|CB674581.1|CB674581
genomic: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGgtaatagtac ... ccatatacagGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAA
EST: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAG GAAGCACATGCEST: gi|9864918|gb|AU100668.1|AU100668
genomic: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGgtaatagtac ... ccatatacagGAAGCACATGC
EST: CAAATAATGGAGG-AAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAG GAAGCACATGCCAGAGAACNGGAGGTGCATGATGCTATTGGATATNCAGAAEST: gi|29678307|gb|CB674582.1|CB674582
genomic: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGgtaatagtac ... ccatatacagGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAA
EST: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAG GAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAEST: gi|33683949|gb|CF312188.1|CF312188
genomic: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGgtaatagtac ... ccatatacagGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAA
EST: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAG GAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAA
genomic: CAAATAATGGAGGAAAGCCATTTTCAGATCAAATGCTCGCTTGCATTAAGgtaatagtac ... ccatatacagGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAA
tttgctgttacttttaagtcaagtttcaatctttatttttatcttccatatacagGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAAC
tctttatttttatctt CT-rich tract
aagtttcaatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagtacttctgttttgctgttacttttaagtcaagtttcaatctttatttttatcttccatatacagGAAGCACATGCCAGAGAACAGGAGGTGCATGATGCTATTGGATATACAGAAGAGCAAATATCTGAATTGAAAAAGGAGATCCAGAGAACTCGGGATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC