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gtaactatcatacatttttttgtcaaggtgcatatcttgaataactcaactgatatgctgtatgccgtaccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCATTTCATCGAGAGAAGCTGATATAGCAATATTGGAAGAACCAGAGCATC
species | Oryza sativa |
transcript | LOC_Os02g33580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCEST: gi|29678870|gb|CB675145.1|CB675145
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCEST: gi|58610971|gb|CK038683.1|CK038683
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTATCATCATTCCTGCTGGGGATACATCACAGTTCEST: gi|29640793|gb|CB645800.1|CB645800
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCEST: gi|116875217|gb|EC365725.1|EC365725
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCEST: gi|11442630|gb|BF430533.1|BF430533
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCEST: gi|218500847|gb|FG954980.1|FG954980
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCEST: gi|29640227|gb|CB645236.1|CB645236
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCEST: gi|87017167|gb|CI286303.1|CI286303
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
EST: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAG TTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
genomic: AAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaactatca ... taccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTC
tcaaggtgcatatcttgaataactcaactgatatgctgtatgccgtaccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCATTTCATCGAGAGAAGCTGATATAGCAATATTGGAAGAACCAGAGCATC
ttgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactatcatacatttttttgtcaaggtgcatatcttgaataactcaactgatatgctgtatgccgtaccctgcagTTCTCCAAAGAGCGCCGTAGCATCATTCCTGCTGGGGATACATCACAGTTCATTTCATCGAGAGAAGCTGATATAGCAATATTGGAAGAACCAGAGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA