1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acaaccctatgccactttaattcaggcctgattacatgcatatccaacttttttttttactttttatttatagtaactgtagaatatgaatttttaacagGAAGATGCTGGTGGCGGTTTAGTATTCTGGCATCCAAAAGGTGCTATTATCAGACATGTTTTAGAAGACTCATGGAAACAGATTCACTTGCAACGTGGTT
species | Oryza sativa |
transcript | LOC_Os02g33500.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGTGATCATCGGCGATTAGGTCTGGATCTTGATCTATTCTCCATACAG GAAGATGCTGGTGGCGGTTTAGTATTCTGGCATCCAAAAGGTGCTATTATCEST: gi|38474804|gb|CF958937.1|CF958937
genomic: GCCGTGATCATCGGCGATTAGGTCTGGATCTTGATCTATTCTCCATACAGgtataatctt ... tttttaacagGAAGATGCTGGTGGCGGTTTAGTATTCTGGCATCCAAAAGGTGCTATTATC
EST: GCCGTGATCATCGGCGATAAGGTCTGGATCTTGATCTATTCTCCATACAG GAAGATGCTGGTGGCGGTTTAGTATTCTGGCATCCAAAAGGTGCTATTATCEST: gi|58604883|gb|CK032916.1|CK032916
genomic: GCCGTGATCATCGGCGATTAGGTCTGGATCTTGATCTATTCTCCATACAGgtataatctt ... tttttaacagGAAGATGCTGGTGGCGGTTTAGTATTCTGGCATCCAAAAGGTGCTATTATC
EST: GCCGTGATCATCGGCGATTAGGTCTGGATCTTGATCTATTCTCCATACAG GAAGATGCTGGTGGCG
genomic: GCCGTGATCATCGGCGATTAGGTCTGGATCTTGATCTATTCTCCATACAGgtataatctt ... tttttaacagGAAGATGCTGGTGGCG
aacttttttttttactttttatttatagtaactgtagaatatgaatttttaacagGAAGATGCTGGTGGCGGTTTAGTATTCTGGCATCCAAAAGGTGCTATTATCAGACATGTTTTAGAAGACTCATGGAAACAGATTCACTTGCAACGTGGTT
tagtaac putative branch site (score: 15)
ttttt putative PPT
ttttttttacttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaccctatgccactttaattcaggcctgattacatgcatatccaacttttttttttactttttatttatagtaactgtagaatatgaatttttaacagGAAGATGCTGGTGGCGGTTTAGTATTCTGGCATCCAAAAGGTGCTATTATCAGACATGTTTTAGAAGACTCATGGAAACAGATTCACTTGCAACGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - ctatgcc
- - - - - - - - - - ttcaggc
- - - - - - - - - - - - - - - - tacatgc