1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgcccatgtatagtttatgacagattcactatagactagtcatggactatctgatttaaacaagttagctatttcctttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
species | Oryza sativa |
transcript | LOC_Os02g33080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCACTGATCTTGGCCTGTACCGNAAATCACATATTCCAGNTGGNCCAG GTTATCAAGNGAAATTTTATTTCAATCCTGGTGEST: gi|226698500|gb|GO497078.1|GO497078
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTG
EST: GTACCGCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|218484020|gb|FG954038.1|FG954038
genomic: GTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|58682108|gb|CK070795.1|CK070795
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: GGCACTGATCTTGGCCTGTACCGGAGAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|109974732|gb|DT807075.1|DT807075
genomic: GGCACTGATCTTGGCCTGTACCGCA-AATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: GCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|27577312|gb|CB000007.1|CB000007
genomic: GCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: TGGCACTGATCTTGGCCTGTACCGCATATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAATTEST: gi|27576202|gb|CA998896.1|CA998896
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAA-G
EST: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|38476031|gb|CF960164.1|CF960164
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|88440825|gb|CI693394.1|CI693394
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|29671592|gb|CB667867.1|CB667867
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|33795740|gb|CF323739.1|CF323739
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGEST: gi|58679024|gb|CK067711.1|CK067711
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
EST: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAG GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
genomic: TGGCACTGATCTTGGCCTGTACCGCAAATCACATATTCCAGATGGACCAGgtattgccca ... ttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
agactagtcatggactatctgatttaaacaagttagctatttcctttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
atctgat putative branch site (score: 4)
ctatttccttttt putative PPT
atttaaacaagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcccatgtatagtttatgacagattcactatagactagtcatggactatctgatttaaacaagttagctatttcctttttggctagGTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA