1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttttcaaaaaaaggggctgacattgagtattcctgtatttttcattacagcttctcttttgtgataaagcaaactcacgtaaatattgttttatgtagGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCAC
species | Oryza sativa |
transcript | LOC_Os02g32730.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAG GCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAA
genomic: GCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGgttttttacg ... ttttatgtagGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAA
attacagcttctcttttgtgataaagcaaactcacgtaaatattgttttatgtagGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCAC
aactcac putative branch site (score: 28)
ttgtttt putative PPT
taaatattgttttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttcaaaaaaaggggctgacattgagtattcctgtatttttcattacagcttctcttttgtgataaagcaaactcacgtaaatattgttttatgtagGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - caaaaaa
- - - - - - - ggggctg
- - - - - - - - - - - - - - - - tcctgta
- - - - - - - - - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa