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gttagcaaatctttttgtttctgccccctccccctttttctttgtactgcaagagatgaatgctttattgtttgcttttttatgcatgttctttttaaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTGGTGAAGCTAGTGGTTTTGATGCAAAGGGTTTTGCAGTTGCGAATAAAG
species | Oryza sativa |
transcript | LOC_Os02g32350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAG GAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTEST: gi|29674463|gb|CB670738.1|CB670738
genomic: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAGgttagcaaat ... aaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATT
EST: GGAGGAAGTTGCTAACCATCAGGGTTTAGGTCGTTGGAGCAAG GAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTEST: gi|29687922|gb|CB684197.1|CB684197
genomic: GGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAGgttagcaaat ... aaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATT
EST: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAG GAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTEST: gi|58670976|gb|CK059662.1|CK059662
genomic: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAGgttagcaaat ... aaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATT
EST: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAG GAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTEST: gi|29622580|gb|CB627591.1|CB627591
genomic: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAGgttagcaaat ... aaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATT
EST: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAG GAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTEST: gi|6012905|gb|AU078722.1|AU078722
genomic: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAGgttagcaaat ... aaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATT
EST: TAANGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAG GANC-TGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAAATEST: gi|29627292|gb|CB632303.1|CB632303
genomic: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAGgttagcaaat ... aaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAA-T
EST: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAG GAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTEST: gi|117240306|gb|CT842733.1|CT842733
genomic: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAGgttagcaaat ... aaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATT
EST: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAG GAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATT
genomic: TAAGGTTGGAGGAAGTTGCTAAGCAGCAGGGTTTAGGTCGTTGGAGCAAGgttagcaaat ... aaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATT
agagatgaatgctttattgtttgcttttttatgcatgttctttttaaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTGGTGAAGCTAGTGGTTTTGATGCAAAGGGTTTTGCAGTTGCGAATAAAG
ttcttttta CT-rich tract
ttctttttaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcaaatctttttgtttctgccccctccccctttttctttgtactgcaagagatgaatgctttattgtttgcttttttatgcatgttctttttaaactttcagGAACCTGGTGCTGCTGAAGAATCAATAAGAGATCTTCCACCATCAGCAATTGGTGAAGCTAGTGGTTTTGATGCAAAGGGTTTTGCAGTTGCGAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG